Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1681 147 4e-30 seq116 102 2e-16 seq3050 100 5e-16 seq6887 98.7 2e-15 >seq1681 Length=28542 Score = 147 bits (162), Expect = 4e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 ||||| |||||||| || |||||||| || | |||||||| | ||||| || || || Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | ||||||||| || |||||||| ||||||||||||||||| ||||| || | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || ||||| || || || ||||| | ||||| ||||| || || || ||||| || Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 68451 AATATCTGCATTAT 68464 || || |||||||| Sbjct 28362 AAAATTTGCATTAT 28349 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || || || |||||||| || || || || Sbjct 24802 CCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGAC 24861 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| ||||| || || || || || || || | || || || || ||| Sbjct 24862 AAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGA 24921 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||| || |||||| || || ||| | || || Sbjct 24922 ATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATC-GCTAGGCTCGAC 24980 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || ||||||||||| || || ||||| || || |||||||| Sbjct 24981 TTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || || ||||| || || || || || || Sbjct 24245 CCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAA 24304 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || ||||| | ||||| || ||||||||||| | || || || |||||| Sbjct 24305 AGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGA 24364 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || ||||| ||||| || ||| || ||||| | || || Sbjct 24365 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACC 24424 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||| || || ||||| |||||||| || || || Sbjct 24425 TCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 >seq116 Length=136166 Score = 102 bits (112), Expect = 2e-16 Identities = 220/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 |||||||||| ||| || || ||||||||||| || ||||| ||||||||| || Sbjct 12548 GTAATACATACCCGTTTTCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAAT--- 12492 Query 30884 CTT--CATAG-AGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGG 30940 ||| ||||| |||| || | | ||| || | ||| ||||||||| ||||| Sbjct 12491 CTTTCCATAGTTGGGCTCTTTTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGG 12432 Query 30941 ACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTA 31000 | | || ||||| ||||| ||||| | || ||| | | ||||| | ||||| || Sbjct 12431 AGCACGATCTGCGGCAAGATCAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATA 12372 Query 31001 GATTGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAAT 31060 | ||||| | ||| | || ||| | |||| || || ||| |||||||| Sbjct 12371 AAGGGCCTTTATATCATCTGGAATACCACCTATGTGTTGAATAGAACCCTGATTGGCAAT 12312 Query 31061 AATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTA 31120 || || | |||||||||||| ||||| || | |||||||| | || | || Sbjct 12311 GATTGCCAATTTGAGGGCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTG 12252 Query 31121 GTTGTTGACCACAGGGAACTCTCCAG 31146 || ||||| || |||| ||||||| Sbjct 12251 ATTATTGACAACCTGGAAATCTCCAG 12226 >seq3050 Length=12077 Score = 100 bits (110), Expect = 5e-16 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 268501 GTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG--ACTTTG 268558 ||||||||||||||||| ||| || || || ||| ||||| | |||||| |||||| Sbjct 3577 GTACGGAGAACGTGGATAGAAAGGAGTAGTTTCCTTCTGAGG--TATCTCGGCAACTTTG 3634 Query 268559 CCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACC-GCAGAT 268617 |||||||||||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 3635 CCAAAGAGCTCGCTAGTAGAGGCTTGATAGAAGCGGACAGTTTTCTCAAGACCAGCAGA- 3693 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 |||||||| || || | || || || || ||| | || || | ||||| || Sbjct 3694 ACGGATTGCTTCAAGAAGTCGTGTTGTACCAATACCAACAACATCACCGGTATATTCGCT 3753 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 || ||||| || || || || || || || | || || ||||||||||| ||||| Sbjct 3754 CAATTCGAAAGAAACTTGAACGTGTGATTGAGCAGCAAGATTGTAAACCTCATCGGGTTT 3813 >seq6887 Length=2215 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || | ||||||||||| || Sbjct 731 GCGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTTGA 672 Query 84514 GCCCCACATCGGGC 84527 |||||||||||||| Sbjct 671 GCCCCACATCGGGC 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921462152905200