Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1681 113 4e-20 seq2406 89.7 4e-13 >seq1681 Length=28542 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||| ||||||||| || | | || | ||| | ||||||||||| ||||| ||||| | Sbjct 24240 AAAAACCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGT 24299 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | |||||| ||||| ||||| ||||||||| | ||||||||||| || || | Sbjct 24300 CCGAAAGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTG 24359 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| ||||||||||| ||||| || | | |||| ||||| | | | Sbjct 24360 GTGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCT 24419 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 | || |||| || | ||||||||| || || ||||| || Sbjct 24420 CCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | |||||||| ||||| || ||||| || Sbjct 24799 ATGCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCC 24858 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || | |||||| || || |||| |||||||| || || ||| Sbjct 24859 GACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGA 24918 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | || | || ||| | | ||| Sbjct 24919 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCG 24978 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| ||||| ||||||||||||||||| Sbjct 24979 ACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq2406 Length=17766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||||| || || || ||||||||||| || || Sbjct 17635 ACCACCACGAAGACGAAGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGA 17694 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||||| |||||| ||||| || ||||| |||| |||||||||||||| || || Sbjct 17695 AAGAGTACGACCATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 17754 Query 114275 AATGCCTTCTTT 114286 |||||| || || Sbjct 17755 AATGCCCTCCTT 17766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420063175402920