Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2517 127 4e-24 >seq2517 Length=16602 Score = 127 bits (140), Expect = 4e-24 Identities = 374/568 (66%), Gaps = 14/568 (2%) Strand=Plus/Plus Query 42294 CAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGAT 42352 || || |||||| | ||||||||||| | | | ||| |||||||| || ||| | Sbjct 11494 CACGATATCTGGGAATTCTACAAGAAGGCTGTCGCT-TCCTTCTGGACCGTTGAAGAGGT 11552 Query 42353 TGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTT 42408 ||| ||||||| || ||| ||||||| |||| ||| || || | || | Sbjct 11553 TGATTTGGCCAAAGATCTCACCGACTGGGAGAGACTGAATGACGGCGAGCGTCACTTTAT 11612 Query 42409 TCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGG 42468 | | || | | || |||||||| || ||| || || || |||||||| || || Sbjct 11613 TTCCCA----CGTTCTCGCCTTCTTTGCTGCCAGCGATGGTATCGTCAATGAAAATCTCT 11668 Query 42469 CCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 || | ||| |||| || || || | || || || || ||||| || | || Sbjct 11669 GCATGAACTTCTGCCAAGAAGTTCAAGTGCCC-GAAGCTCGTTGTTTCTATGGTATGCAA 11727 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || ||| | |||||| | ||||| || |||| | || || |||| ||||| | | Sbjct 11728 ATTGCCGTTGAGAACATCCACTCCGAAATGTATTCTCTCCTCATCGACACTTACATTCAG 11787 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 || || | | | ||| | || ||||| || || || || | ||||| |||||||| Sbjct 11788 GAGCCGGCCAAACGTGATTTCCTCTTCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAG 11847 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 ||||| || ||||| || | ||||| | | | || || | | || ||| | | Sbjct 11848 AAGGCCGATTGGGCTCTGAGGTGGATTGCAAATAGGGAAGCTAGCTACGCAGAGCGTGTT 11907 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | || || || || |||||||||| || | ||||| || ||||| ||| Sbjct 11908 GTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTCGCGTCAATCTTTTGG 11967 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| || ||| || |||||||| ||||| ||| || || | || ||| | || Sbjct 11968 CTTAAGAAGCGTGGTCTC-ATGCCCGGTCTCACTTTCAGTAATGAGTTGATTAGCCGAGA 12026 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGC 42854 ||||| |||| | || || |||||| Sbjct 12027 TGAGGGTTTGCACACTGATTTCGCCTGC 12054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944175003021600