Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1681 145 2e-29 seq13481 96.9 8e-15 >seq1681 Length=28542 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| ||||| | | ||||| || || ||||||||||| ||||| || Sbjct 24837 TTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAA 24896 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| |||||||| || |||| || |||||||| || |||||||| ||||| || || Sbjct 24897 GATAAGACGCTGCTG---ATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAAC 24953 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||||| | || ||||| || || || || || ||||| |||||||| Sbjct 24954 ATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTT 25013 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 25014 TACAAAAATCTGCAT 25028 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || ||||||| || |||||| || ||||| ||||| | Sbjct 24245 CCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAA 24304 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| || || ||||| || |||||||| ||| ||| Sbjct 24305 AGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGA 24364 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| |||||||| ||||| ||||| || || || | || |||| || || Sbjct 24365 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACC 24424 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || | || ||||| || || || || || || || Sbjct 24425 TCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 >seq13481 Length=537 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 288340 AAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| || ||||| ||| ||||| ||||||||||| |||||||| ||||||||| Sbjct 537 AAGATTAGTCGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTC 481 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | ||| || | || ||||| || || || || || || || |||||| Sbjct 480 ACATTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTC 421 Query 288457 TTGACGAATATCTGCATTAT 288476 || || || |||||||| || Sbjct 420 TTTACAAAAATCTGCATAAT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179444159780980