Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq116 123 3e-23 >seq116 Length=136166 Score = 123 bits (136), Expect = 3e-23 Identities = 351/536 (65%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 114793 AACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGC 114852 ||| | || ||| || || || || ||||||||||| | || ||||| | | ||| Sbjct 11149 AACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAAT 11090 Query 114853 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 114912 || ||| |||| || ||||| |||| || | || || ||| | ||||| || Sbjct 11089 CTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGG 11030 Query 114913 TTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGC 114969 ||| ||||| | || | | || ||| | ||| | || | |||||| || || Sbjct 11029 TTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGC 10970 Query 114970 TGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 115029 ||| ||| || || || ||||| |||| | |||| |||| ||||| || || Sbjct 10969 GGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGA 10910 Query 115030 AATACGAGACTTATTGGCTCTGACATCA-TGGATGTGCATACCAATACCCCCTGCCCACT 115088 |||| || ||| || || || || | | | |||||| || || || || Sbjct 10909 AATAAAAGTACCCTTG-CTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCT 10851 Query 115089 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTAT 115148 |||| ||| || |||| |||| | ||||||| || || || |||| |||| Sbjct 10850 TTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 10791 Query 115149 TTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTG 115208 ||| ||| ||||| ||||| |||| ||| || |||||| || | |||||||| |||| Sbjct 10790 TTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTG 10731 Query 115209 GTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAA 115268 | | || || ||||| ||| |||||| || || ||||| ||| | || | Sbjct 10730 GGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGA 10671 Query 115269 TGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 || | |||||||| || | || || ||||||||||||| ||||||| | ||| Sbjct 10670 GATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTCC 10615 Score = 105 bits (116), Expect = 8e-18 Identities = 193/283 (68%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 114349 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 114408 ||| || |||||||| ||||||||||| || || |||||||| |||| || || Sbjct 11667 CTCAACTGGATAAAAGCATCTATCGATAACTCTGTTGAGATTTTTAGTGATGACACCAGT 11608 Query 114409 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 114468 | | || |||| || |||| ||| | | || ||||||| | || || || Sbjct 11607 TACATACTGCAGCTGATCAAAATCGAAAGTCTTCGCCTTAGTATTGACAAAATTTGGCAG 11548 Query 114469 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 114528 | ||||| |||| ||||||||| | ||||| || | | | || || | |||||| Sbjct 11547 TGATATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTC 11488 Query 114529 CGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 114588 || || | ||| || | ||| || || |||| | | || || || ||| | || || Sbjct 11487 AGTGCAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCA 11428 Query 114589 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 ||||||||||||| |||| | || | || |||||||||||| Sbjct 11427 AGCATCCTTGTAAATCATGAAGGGATTACCAGTCTCCGTTTGG 11385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597249735142800