Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1681 98.7 1e-15 >seq1681 Length=28542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || ||||||||||| || | || || || |||| || || ||||||||||||||| Sbjct 24281 TCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAAT 24340 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| |||||||| || | ||| | | || |||||| ||| || || | || Sbjct 24341 ATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTC 24400 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| |||| ||||| || | || || ||||||||||| || || || || Sbjct 24401 TCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||||| |||||||| || | || ||| || | Sbjct 24813 ACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCC 24872 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| || || || || || || || |||||||| || | || | | ||||| Sbjct 24873 ATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTT 24932 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | || | | || ||||| | || || || | || || Sbjct 24933 GTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAAT 24992 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || ||||||||||| || ||||| Sbjct 24993 GGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || ||||||||||| || | ||| | | |||||||||| ||| || ||| | || Sbjct 24670 ATTAGTCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCACATTC 24729 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| |||| ||||| || | || || ||||||||||| || || || ||| Sbjct 24730 TCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCACA 24789 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 24790 AAGATTTGCAT 24800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543118348874400