Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1681 123 2e-23 seq109 91.5 1e-13 seq13481 84.2 2e-11 >seq1681 Length=28542 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| ||||||| || |||||||| ||||| ||||| || | Sbjct 24244 ACCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGA 24303 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| || ||||| || || | ||||| |||||||| || || || Sbjct 24304 AAGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGG 24363 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 |||||||||||| || || || || ||| ||| ||| | || |||| |||| |||| Sbjct 24364 AATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGC-TCCA 24422 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 | || | ||||| || ||||| || | ||||| || Sbjct 24423 CCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| || ||||| || | | ||||| | || || | || ||||| Sbjct 24832 GTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCTAATTGTTTGCCT 24891 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||| || |||||||||||||| || || || || || ||| Sbjct 24892 GCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTA 24951 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | | || ||||| | || | ||| || ||||| | ||| Sbjct 24952 ACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTC 25011 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| Sbjct 25012 TTTACAAAAATCTGCAT 25028 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || |||||||| || | || ||| || | ||||| || |||||||| ||| | Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || || ||||| || ||||| || || || ||||| || || ||||||| | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | | || ||||| | ||| | || || || || | ||| || || Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 64433 AAAATTTGCATT 64444 |||||||||||| Sbjct 28362 AAAATTTGCATT 28351 >seq109 Length=140612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || ||||||||||| | || || || | ||||| | || Sbjct 74658 TGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCTTCCAATTGT 74717 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| |||| | || ||||| || | |||||| || || || ||| | ||||| Sbjct 74718 TTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATCTCGAATTTTA 74777 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||| ||| || ||||| | ||| | || ||||| || Sbjct 74778 GCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTT 74837 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || ||||| ||||| Sbjct 74838 AAGGTTTTGACAAAAATCTGCAT 74860 >seq13481 Length=537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAAC 64371 || || |||||||| || ||||||||||||||||| || || | | || ||||| ||| Sbjct 534 ATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGA-TCTTCGCTTTCACATT 476 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 ||| | |||||||| | || ||||| | || | ||| || || || | ||| ||||| Sbjct 475 CTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTTAC 416 Query 64432 GAAAATTTGCATTTTAATAATGATACA 64458 ||||| ||||| | | || |||||| Sbjct 415 AAAAATCTGCATAATTACAA-GATACA 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499557924260400