Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1681 107 2e-18 seq109 102 7e-17 >seq1681 Length=28542 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || ||||||||||||||||| || || Sbjct 24799 ATGCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCC 24858 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || |||||||| ||||| | || | || ||||| || || Sbjct 24859 GACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGA 24918 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || || | || | || ||| || |||| Sbjct 24919 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCG 24978 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||| || |||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct 24979 ACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCATCG 25030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 || || ||||| || || ||| || ||| | ||| |||| ||| || || || | Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || | ||||| ||||| || |||||||| || || |||||||| || || | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| ||| | ||| ||||||||||| | ||||| || || ||||| || ||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 28362 AAAATTTGCAT 28352 >seq109 Length=140612 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||| | || || || |||||||| ||||| || ||||| | Sbjct 74634 CCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAG 74693 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| ||||||||||| || ||| | ||||| |||||||| || | ||| Sbjct 74694 AGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGA 74753 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||| ||||||| || | || | || | | ||| ||| Sbjct 74754 ATACCCTCCTTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACT 74813 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || ||||| | |||||||| |||| ||||| |||||||| |||||| || Sbjct 74814 TCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCATCCCG 74864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451924607943600