Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq116 114 2e-20 seq194 111 2e-19 >seq116 Length=136166 Score = 114 bits (126), Expect = 2e-20 Identities = 349/536 (65%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 116754 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 116813 ||||| || ||| || || || || |||||||| ||| | || ||||| | | ||| Sbjct 11149 AACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAAT 11090 Query 116814 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 116873 || ||| |||| || ||||| |||| || | || || ||| | ||||| || Sbjct 11089 CTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGG 11030 Query 116874 TTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGCCTGGTTTACATACCTCGC 116930 ||| ||||| | || | | || || | ||| | || | |||||| || || Sbjct 11029 TTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGC 10970 Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990 || || || || || ||||| |||| | |||| |||| ||||| || || Sbjct 10969 GGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGA 10910 Query 116991 AATACGAGACTTGTTGGCTCTGACATCG-TGGATGTGCATACCAATACCCCCTGCCCACT 117049 |||| || ||| || || | || | | | |||||| || || || || Sbjct 10909 AATAAAAGTACCCTTG-CTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCT 10851 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 |||| ||| || |||| |||| | ||||||| || || || |||| |||| Sbjct 10850 TTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 10791 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTG 117169 ||| ||||||||| ||||| |||| ||| || |||||| || | |||||||| |||| Sbjct 10790 TTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTG 10731 Query 117170 GTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229 | | || || ||||| ||| |||||| || || ||||| ||| ||| | Sbjct 10730 GGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGA 10671 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 || | |||||||| || | || || ||||||||||||| ||||||| | ||| Sbjct 10670 GATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTCC 10615 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/283 (67%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 116310 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| || |||||||| ||||||||||| || || |||||||| |||| || || Sbjct 11667 CTCAACTGGATAAAAGCATCTATCGATAACTCTGTTGAGATTTTTAGTGATGACACCAGT 11608 Query 116370 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 116429 | | || |||| || |||| ||| | | || ||||||| | || || || Sbjct 11607 TACATACTGCAGCTGATCAAAATCGAAAGTCTTCGCCTTAGTATTGACAAAATTTGGCAG 11548 Query 116430 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 116489 | ||||| |||| ||||||||| | ||||| || | | | || || | |||||| Sbjct 11547 TGATATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTC 11488 Query 116490 CGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 || || | ||| || | ||| || || |||| | | || || || ||| | || || Sbjct 11487 AGTGCAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCA 11428 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 ||||||||||| | ||| | || | || |||||||||||| Sbjct 11427 AGCATCCTTGTAAATCATGAAGGGATTACCAGTCTCCGTTTGG 11385 >seq194 Length=114854 Score = 111 bits (122), Expect = 2e-19 Identities = 116/150 (77%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| ||||| || |||||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 12842 GGGAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACTGCTAGGGTTTTG 12783 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTG--TGCC--GTCCCCGC 176946 || ||||| ||||| || | ||||| ||||| || |||| | || || ||||| Sbjct 12782 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAGTT----AATTGAATTCCTTGTTCCCGC 12727 Query 176947 CTTGTTCGCATCGTCCAACTTGGGAATACC 176976 | ||||||||| |||| ||| |||||||| Sbjct 12726 ATCGTTCGCATCATCCAGCTTCGGAATACC 12697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613400526435600