Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq116 116 6e-21 >seq116 Length=136166 Score = 116 bits (128), Expect = 6e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 ||||||||||| | || | ||||| | | ||| || || ||||| || || || || Sbjct 12586 GTGAACTGAATTGGGTCGGCTGCAGGACGGGTTCGAAGGTAATACATACCCGTTTTCAGC 12527 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| |||| |||| | |||||||||| | || | |||||| || ||| Sbjct 12526 CCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTCCATAGTTGGGCTCTTTTATG 12467 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 || | || || ||||| || ||||| ||||| || || ||||||||||| | || ||| Sbjct 12466 TGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCGGCAAGATCAATA 12407 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || || ||||||| || ||||| || ||||| Sbjct 12406 ATCGTTTTCTGCGGGATTTCCCAGACAGTCTT 12375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795016942389600