Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2517 239 5e-58 seq1681 98.7 1e-15 seq109 87.8 2e-12 >seq2517 Length=16602 Score = 239 bits (264), Expect = 5e-58 Identities = 418/604 (69%), Gaps = 6/604 (1%) Strand=Plus/Minus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 || ||||| |||||||| || || || ||||| ||||| || | | ||| | || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 || |||||||| | ||||||||||| || || || || |||||||| || | ||||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTG 133059 || || |||||||| || || || || ||||| || || | ||||| || | | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 133060 GCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 ||||| | | || ||||| | ||| ||||| |||||||| | ||||| || || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGA 133177 ||||| || || || || | | | | | || || | | | ||| ||||||| Sbjct 11828 GTTTCAATTGCATTGAAGAG--GAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGA 11771 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 ||||| ||||||||||| ||||| | |||||| | ||| ||||| | || || || | Sbjct 11770 TGAGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAAC 11711 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGA 133297 | || || ||| ||| || |||||||| ||| | | |||||||| ||||||| Sbjct 11710 AACGAGCTTCGGGCACTTGAACTTCTTGGCAGAAGTTCATGCAGAGATTTTCATTGACGA 11651 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | || |||||||| || || ||||| || ||||| || || || |||||| ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 133358 TCAAGCGCTCCCAGTCGCGCGTG-TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 ||| | |||||||||| | | | || |||| || || ||||| || |||||||| || Sbjct 11590 TCAGTCTCTCCCAGTCG-GTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAG 11532 Query 133417 GACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACA 133476 || || | || || ||||| | ||| || || |||||| ||||| | || || Sbjct 11531 GAAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACG 11472 Query 133477 AACC 133480 |||| Sbjct 11471 AACC 11468 >seq1681 Length=28542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || || || || ||||| ||||| |||| || ||| | | Sbjct 28351 AATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCAAG 28410 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || || | ||||| ||||| |||||| | ||||| Sbjct 28411 CGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCA 28470 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || ||||| || ||||| || | || |||||| ||||||||| Sbjct 28471 ACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTACAA 28530 Query 38423 CATCCAAAAGGA 38434 |||||| || || Sbjct 28531 CATCCAGAAAGA 28542 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || || || |||||||| || | || |||||| | | | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | || |||| ||||| || |||||||| | || || Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || |||||||| | || || | ||||| | |||||||| Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || |||||| ||||| Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGT 24813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCA 38314 || ||||| |||||||||||||| || || | || || ||| | | |||| | || Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAG 24400 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 || | | || | || |||| |||||||| |||||||| | || || ||||| ||||| Sbjct 24399 AATG-TGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCAT 24341 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| || || || ||||| |||| || || || |||||||| || || || || Sbjct 24340 ATTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCGGACTACAATATTCAGAAAGA 24281 Query 38435 AGCGACGCTGCATTTGGTGCTGCG 38458 | | || || ||| | ||||| || Sbjct 24280 ATCTACTCTTCATCTTGTGCTTCG 24257 >seq109 Length=140612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || |||||||| ||||| | || || ||| || | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 38304 GAC-AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | ||||| | || || ||||| ||||| | || || Sbjct 74800 GATTATATTGAGAATG-TGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCA 74742 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| ||| |||||||| |||| || | || || ||| || ||||| Sbjct 74741 GCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAA 74682 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || |||||| ||||| Sbjct 74681 CATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGT 74645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500085832454400