Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1114 158 5e-33 seq989 152 2e-31 seq2654 140 1e-27 seq828 140 1e-27 seq109 140 1e-27 seq1956 118 4e-21 seq1681 105 3e-17 seq2258 100 1e-15 seq110 100 1e-15 >seq1114 Length=41459 Score = 158 bits (174), Expect = 5e-33 Identities = 450/685 (66%), Gaps = 15/685 (2%) Strand=Plus/Minus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||| | ||||| ||||| || || || ||||| | |||| ||||||| || | Sbjct 36549 TTGGTATTGATTTGGGAACAACCTTCTCTTGCGTTGGTGTGTTCCAACATGGAAAGGTGG 36490 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TTTACG 451033 |||| || || ||||| || || || || ||||| || | || || || || Sbjct 36489 AAATCATTGCTAATGATCAGGGCAATCGCACCACTCC--CA--GTTATGTGGCCTTCACA 36434 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| | || | || | || | ||||| || |||| |||| | || | | || Sbjct 36433 GATACCGAGCGTCTGATCGGTGATGCTGCAAAGAATCA--GGTAGCTATGAACCCAACAA 36376 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| || | ||||| || ||| | ||||| |||| || ||| || ||||||||| Sbjct 36375 ACACTGTGTTCGATGCCAAGCGTCTTATTGGTCGTAGGTTTGACGACCCCACTGTACAAG 36316 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || | | | | |||||| || || || ||||| | ||| | | Sbjct 36315 GTGACATGAAGCATTGGCCCTTTCATGTAGCCAACTGTAAGGGCAAGCCGAAGATTGAGG 36256 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | || || || | ||| |||| |||||||| ||||| || ||||| | | Sbjct 36255 TTGAATTCAAGGGAGAGAAGAAAGCTTTCTTCCCTGAAGAGATTTCCTCCATGGTGTTGA 36196 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 || ||||| |||||||| || ||| ||||| | || || ||||| || || | Sbjct 36195 AGAAGATGAAGGAAACAGCCGAGGCATACATTGGCAAAACTGTGACAGATGCCGTTATCA 36136 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 | ||||| || || || ||||| || || || || || || ||||| || || Sbjct 36135 CGGTTCCAGCCTACTTTAATGACAGTCAGCGTCAGGCCACAAAGGATGCTGGCGTCATCT 36076 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 |||| | ||||||||||| ||||| ||||| ||||| |||||||| ||||||| || Sbjct 36075 CTGGAATGAATGTTCTTCGTATTATCAATGAGCCTACTGCAGCTGCCATAGCATACGG-T 36017 Query 451452 TAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 | ||| || || | || ||| | | | || ||||| ||||| || | Sbjct 36016 TTGGACAA--GAAGGTTGGCTCCGAGCGCAATGTGCTGATCTTCGATTTGGGTGGTGGTA 35959 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 || ||| || | || || |||||||| || | |||||||| ||| |||| || Sbjct 35958 CTTTCGATGTCTCCATCCTCTCCATTGAAGACGGCATCTTTGAAGTTAAGTCAACTGCTG 35899 Query 451572 GTGATACTCATCTAGGAGGTGAAGA 451596 |||| || || || || ||||| || Sbjct 35898 GTGACACACACCTGGGTGGTGAGGA 35874 >seq989 Length=45875 Score = 152 bits (168), Expect = 2e-31 Identities = 260/374 (70%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 ||||| | ||| ||| ||||||||||| ||||| | |||||| | |||||||| Sbjct 31852 GGTGAGATCAAAGATTTCGCTCCTGAAGAGGTTTCAGCCATGGTTTTGGGCAAAATGAAG 31793 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 || | || || || | ||| | ||||| |||| ||| |||||||||| || Sbjct 31792 GAGATTGCTGAGGCCTACCTCGGTACCAAGGTTACCCATGCCGTAGTTACTGTTCCAGCC 31733 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 ||||| |||||||| || || |||||||| ||||||||||| ||| ||| ||||| | Sbjct 31732 TATTTTAATGATGCTCAGCGTCAAGCAACCAAAGATGCAGGTGCTATCGCTAATTTAACT 31673 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 ||||||| || || || ||||| || || || ||| | || ||||| | ||| || Sbjct 31672 ATTCTTCGTATCATCAACGAACCAACTGCTGCAGCTATTGCCTATGG-TTTGGATAA--G 31616 Query 451463 AAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACT 451522 |||| | || || || || | || || ||||| ||||| || || ||| Sbjct 31615 AAAG---GCGGCGAGAAGAACATCCTTGTCTTCGATTTGGGTGGTGGTACGTTCGATGTC 31559 Query 451523 TCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCAT 451582 || | | |||| || ||| |||||||| || ||||| | ||||||||||||| Sbjct 31558 TCCCTTTTGACAATCGATAGTGGCGTATTTGAGGTTGTAGCAACTAGTGGTGATACTCAT 31499 Query 451583 CTAGGAGGTGAAGA 451596 || || |||||||| Sbjct 31498 CTTGGTGGTGAAGA 31485 >seq2654 Length=15263 Score = 140 bits (154), Expect = 1e-27 Identities = 448/686 (65%), Gaps = 17/686 (2%) Strand=Plus/Minus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| || ||| | ||||| ||||| || || || ||||| | |||| ||||||| || | Sbjct 1072 TTGGTATCGATTTGGGAACAACCTTCTCTTGCGTTGGTGTGTTCCAACATGGAAAGGTGG 1013 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TTTACG 451033 |||| || || ||||| || || || || ||||| || | || || || || Sbjct 1012 AAATCATTGCTAATGATCAGGGCAATCGCACCACTCC--CA--GTTATGTGGCCTTCACA 957 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | || | || | || | ||||| || |||| |||| | ||| |||| | Sbjct 956 GACACCGAGCGTCTGATCGGTGATGCTGCCAAGAATCA--GGTAGCTATGAATCCCAATA 899 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 ||||| ||| || || || ||| | ||||| ||| | |||||| | | || | Sbjct 898 ACACAATATTCGACGCGAAGCGTCTCATTGGTCGTCGATTTGATGACGGTGTAGTGAAGG 839 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 | || | ||| || ||| || | ||| ||||| || | ||| ||| Sbjct 838 AGGATATGAAACACTGGCCTTTCAGAGTGATTAATTCTGGAGGAAGACCGAAAATTGAAG 779 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 || | || || || || || || || | | || |||||||| ||||||||| ||| Sbjct 778 TAGAATACAAGGGAGAGCAAAAGACCTTCTTTGCCGAGGAAATTTCCTCTATGGTT-TTA 720 Query 451272 CTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 | ||| ||||||||||| || || ||| |||| | || || ||||| || || Sbjct 719 CAAAAGATGAAAGAAACTGCGGAGGCATACCTTGGCAAAACTGTGACAGATGCCGTTATC 660 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| || || || ||||| || || || || || || || || || ||| Sbjct 659 ACGGTTCCAGCCTACTTTAATGACAGTCAGCGTCAGGCCACAAAGGACGCCGGTGCGATT 600 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||||| ||||||||||| ||||| ||||| ||||| || ||||| | || || || Sbjct 599 TCTGGTTTGAATGTTCTTCGTATTATCAATGAGCCTACTGCGGCTGCCATCGCCTACGG- 541 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| || || | ||| | || | | | || ||||| ||||| || Sbjct 540 TTTGGACAA--GAAGGTTGGCTTCGAACACAACGTGCTGATCTTCGATTTGGGTGGTGGT 483 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| ||| || | || || |||||||| || | |||||||| ||| |||| | Sbjct 482 ACTTTCGATGTCTCCATCCTCTCCATTGAAGACGGCATCTTTGAAGTTAAGTCAACTGCT 423 Query 451571 GGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| || || || || ||||| || Sbjct 422 GGTGACACACACCTGGGTGGTGAGGA 397 >seq828 Length=53434 Score = 140 bits (154), Expect = 1e-27 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||| |||||||||||||||||| ||||||| ||||| |||||||||| Sbjct 2513 ATGCCGTCATTACTGTCCCCGCTTATTTCAATGATTCACAACGTCAAGCTACTAAAGATG 2454 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||| |||| ||||||||||||| | || || ||||||||||| ||||||| Sbjct 2453 CTGGTCAAATTTCTGGACTAAATGTTCTTCGTGTCATCAACGAACCTACAGCTGCTGCTC 2394 Query 451440 TAGCATATGG 451449 | || || || Sbjct 2393 TTGCTTACGG 2384 >seq109 Length=140612 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||| |||||||| |||||||| ||||| | | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| | ||||| | | || ||||||| ||||||||| || |||||| | ||||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| |||||| | || |||||| | |||||||| | ||| | ||||||| || Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | ||||||||||| || || Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTGTT 74649 >seq1956 Length=23974 Score = 118 bits (130), Expect = 4e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 || || || || || ||||| || || |||||||| | ||| ||| ||| |||| Sbjct 22924 GAGGAGATCTCCTCCATGGTGCTGTTGAAGATGAAAGAGATAGCTGAAGCCTATCTTGGC 22865 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 |||| |||||||||| ||||||||||| || || ||||||||| || || ||| Sbjct 22864 AAGACAGTGTCTGATGCAGTCATTACTGTTCCAGCCTACTTCAATGATAGCCAGCGTCAA 22805 Query 451367 GCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 || || || || ||||| ||| || | || || ||||||||||| || |||||||| || Sbjct 22804 GCTACAAAGGACGCAGGCACA-ATCTCAGGCTTGAATGTTCTTCGTATAATTAATGAGCC 22746 Query 451426 TACAGCAGCTGC 451437 ||| |||||||| Sbjct 22745 TACTGCAGCTGC 22734 >seq1681 Length=28542 Score = 105 bits (116), Expect = 3e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 |||||| | ||||| || || || || |||||||||||||| ||||| || ||||| || Sbjct 28349 ATAATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCA 28408 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 |||| |||||| | | || || |||||||| ||||| || ||||| || || Sbjct 28409 AGCGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGAC 28468 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 ||||||||| | || || | || || ||||| |||||||| Sbjct 28469 CAACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGG 28509 Score = 104 bits (114), Expect = 9e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || ||||| ||||| ||||| || || | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | |||| || || || || ||||||||||||||||| ||||| Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || |||| |||||| | || ||||| | |||||| |||| || ||| Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || || ||||| || || Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTT 24817 >seq2258 Length=19701 Score = 100 bits (110), Expect = 1e-15 Identities = 341/524 (65%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || |||||||||||||| || || || || || | ||| | |||| | || || || ||| Sbjct 620 GGTATTGATCTTGGAACGACTTTCTCCTGCGTCGCTGTATTCCAACACGGGAAAGTCGAA 561 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TTTACGGA 451035 ||||| || || || || || |||||||| || || | || || || || || Sbjct 560 ATTATTGCTAACGATCAGGGCAATCGAACTACCCC--CA--GCTATGTCGCCTTCACAGA 505 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094 | || | ||| | || | ||||| || | | | ||| | || | | |||| Sbjct 504 CACCGAGCGCCTTATTGGCGATGCTGCCAAGAACCA-GGTGGCTATGAACCCGACTAACA 446 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | || | ||||| || ||| | || || || | ||||| | ||||| ||| | | Sbjct 445 CTGTTTTCGATGCAAAGCGTCTCATCGGTCGCCGTTTCGATGACAAGACTGTGCAAGACG 386 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAA 451214 | | ||| || | | |||| | || ||| ||||| | ||| |||| Sbjct 385 ATATGAAACACTGGCCCTTCCATGTGATCAACTCTGGAGGCAAGCCAAAGATTGAAGTCG 326 Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274 | || || || |||| || || || | | || || || || || ||||| || | Sbjct 325 AGTACAAGGGCGAAAGGAAGACATTCTATGCCGAGGAGATCTCCTCCATGGTGCTGTTGA 266 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 | ||||| || || || || || |||| |||| ||||||| || ||||||| Sbjct 265 AGATGAAGGAGACGGCTGAGGCCTACCTTGGCAAGACAGTGTCTGATGCTGTCATTACTG 206 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCT 451393 |||| || |||||||||||| || || || || || || || || || ||| || | Sbjct 205 TTCCAGCCTATTTCAATGATAGCCAGCGTCAGGCCACAAAGGACGCGGGCACA-ATCTCA 147 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || | ||||||||||| ||||| ||||| ||||| || ||||| Sbjct 146 GGCATGAATGTTCTTCGTATTATCAATGAGCCTACTGCGGCTGC 103 >seq110 Length=140342 Score = 100 bits (110), Expect = 1e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||| |||||||| || ||||| | || || || ||||||||||| | Sbjct 32474 ATGCCGTGATTACTGTGCCCGCTTACTTTAATGACGGTCAGCGTCAGGCAACTAAAGAAG 32415 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| | ||| ||||| | ||| ||||| || ||||| ||||| |||||||||| Sbjct 32414 CCGGAGAACATGCAGGTTTTACAATTCACCGAATAATCAATGAGCCTACTGCAGCTGCTC 32355 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGA 451467 | || ||||| | | ||||| |||| Sbjct 32354 TTGCTTATGGTATCGATAAATCTGAAGA 32327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975366283762280