Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq116 111 2e-19 seq194 102 1e-16 seq2517 100 4e-16 >seq116 Length=136166 Score = 111 bits (122), Expect = 2e-19 Identities = 410/639 (64%), Gaps = 19/639 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||||| ||||| || | | || || || || | ||| | || ||| || |||| Sbjct 10629 ACATGTTTATGCGTGTGTCCCTGGGCATTCACGGTGGTGATCTCGAAGCTGCCTTTGAGA 10688 Query 111679 CATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAAC 111734 | || | |||||| | ||||| ||| || || | ||||| |||||||| Sbjct 10689 CGTATCATCTGATGTCTCAAAAGTGGT----TCACTCATGCTTCCCCAACTCTCTTCAAT 10744 Query 111735 GCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCA 111794 | || |||||| || ||| |||| || |||||||| || ||| ||||| || Sbjct 10745 TCGGGAACACCAGTTCCTCAACTGTCAAGCTGTTTCCTCATCACAATGAAGGATGACAGT 10804 Query 111795 ATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGT 111854 || | || || |||| || |||| | |||||| ||| |||||| ||||| || Sbjct 10805 ATTGAGGGTATCTACGATACACTCAAACAGTGTGCCTTAATTTCAAAGAATGCTGGAGGC 10864 Query 111855 ATCGGGATGCACATCCAT-GATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGG 111913 || || | | | ||| | || ||| || || |||| || || ||||| Sbjct 10865 ATTGGTCTTAATGTTCATTGCATTCGTAGC-AAGGGTACTTTTATTTCTGGAACCAATGG 10923 Query 111914 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 111973 | |||| |||| | |||| ||||| || || || || ||| || | |||||| | Sbjct 10924 TGAATCCAATGGCTTGGTTCCTATGCTCCGAGTGTTCAATAGCACCGCTAGATATGTAGA 10983 Query 111974 CCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| ||| ||||| || || | ||| |||| ||||| || ||||| | Sbjct 10984 TCAAGGTGGCAATAAGCGTCCT---GGTGCTTTTGCAATCTACCTTGAACCCTGGCATCC 11040 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| || || ||||| | || ||||| ||| || | ||||||| || | Sbjct 11041 TGATGTCTTGCAGTTCATGGAACTGCGTAGGAACACCGGGGCTGAGGAGATTCGTACTAG 11100 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 ||||| || | |||||||||||||| ||||| || ||| |||| ||| | | || Sbjct 11101 AGATCTATTTTTGGCTCTCTGGATTCCCGATCTTTTTATGCAGAGGGTTCAAAACGATGA 11160 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 |||||| || | | || || | || ||||| | ||| | ||| |||| Sbjct 11161 GAATTGGACTTTTATGGACCCTCACGAATGTCCGGGTCTGGCTGATTGCTGGGGAAAGGA 11220 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 || ||||| |||||||| ||||| || | ||| |||| Sbjct 11221 ATTCGAAGCGCTCTACACCAAGTATGAAGCAGAGGGTCG 11259 Score = 107 bits (118), Expect = 2e-18 Identities = 322/492 (65%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 ||| || | ||||| ||| | ||||||||||||| || || || || || ||||| | Sbjct 12108 GGTATTAGAAACAGCCTTCTTTTGGCACCAATGCCCACTGCATCAACTGCTCAAATTCTC 12167 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 113006 ||||| | |||| ||||||| || | || | | | | | ||| | Sbjct 12168 GGTAACACCGAATCAACTGAACCCATTACCAGTAATGTGTTTTCACGTCGCGTTCTCTCT 12227 Query 113007 GGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 ||||| || | ||||||| || || | || ||||||| || |||| | ||| Sbjct 12228 GGAGATTTCCAGGTTGTCAATAATCACATGTTGAGAGACCTCATTGATCTTGGCATTTGG 12287 Query 113067 TCCAAGGATATGAA---GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTG 113123 ||| ||| | || || |||| | || |||| || |||||| | || | Sbjct 12288 TCCGAGGCCCTCAAATTGGCAATCATTGCCAATCAGGGT---TCTATTCAACACATAGGT 12344 Query 113124 GATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGAT 113183 | |||||||||||| || ||| | || || || ||||||||| | ||| Sbjct 12345 GGTATTCCAGATGATATAAAGGCCCTTTATAAGACTGTCTGGGAAATCCCGCAGAAAACG 12404 Query 113184 GTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTA 113243 | ||||| | ||||||||||||| || |||||||| || ||||| | ||||| Sbjct 12405 ATTATTGATCTTGCCGCAGATCGTGCTCCGTTCATTGACCAGAGTCAGTCACTAAATCTC 12464 Query 113244 TTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAA 113302 ||| || || ||||| ||| ||| | |||| ||||| | ||| |||||||| Sbjct 12465 CACATAAAAGAGCCCAACTATG-GAAAGATTACTTCCATGCATTTCTACGCGTGGAAGAA 12523 Query 113303 GGGTCTCAAAACGGGGATGTATTACCTCCGATC---TAAGGCAAAGGCGCGCCCAATTCA 113359 ||| || |||||||| ||||||||||| ||| | | ||| || ||||||||| Sbjct 12524 GGGGCTGAAAACGGGTATGTATTACCTTCGAACCCGTCCTGCA---GCCGACCCAATTCA 12580 Query 113360 GTTCAGTCTTGA 113371 ||||| | |||| Sbjct 12581 GTTCACTATTGA 12592 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 ||||| |||||||||| || | ||| ||||||| || || || || ||| || Sbjct 11386 CAAACGGAGACTGGTAATCCCTTCATGATTTACAAGGATGCTTGCAATAGAAAATCCAAC 11445 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 || | || ||||| |||||| | ||||| || || || ||||| | |||| || Sbjct 11446 CATCAACATCTGGGTACAATCAAGTGCTCCAATCTTTGCACTGAAATTGTTGAATATAGT 11505 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 || ||||| || |||||||| | || ||||| | || || || | ||| || Sbjct 11506 TCTCCCGAGGAGACTGCCGTGTGTAATTTGGCTTCAATATCACTGCCAAATTTTGTCAAT 11565 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 | || | ||||| || |||| ||| | || || | || || |||| ||| Sbjct 11566 ACTAAGGCGAAGACTTTCGATTTTGATCAGCTGCAGTATGTAACTGGTGTCATCACTAAA 11625 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG 112580 || || ||||||||||| |||||| ||||| || |||||| Sbjct 11626 AATCTCAACAGAGTTATCGATAGATGCTTTTATCCAGTTGAG 11667 >seq194 Length=114854 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 176924 GGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTC 176983 ||||||||||| || |||| ||||| ||||| |||||||| || || || || ||||| Sbjct 12842 GGGAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACTGCTAGGGTTTTG 12783 Query 176984 GCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTG--TGCC--GTACCCGC 177039 || ||||| ||||| || | ||||| ||||| || |||| | || || ||||| Sbjct 12782 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAGTT----AATTGAATTCCTTGTTCCCGC 12727 Query 177040 CTTGTTCGCATCATCCAATTTGGGAATACC 177069 | |||||||||||||| || |||||||| Sbjct 12726 ATCGTTCGCATCATCCAGCTTCGGAATACC 12697 >seq2517 Length=16602 Score = 100 bits (110), Expect = 4e-16 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | || || |||| |||| ||| | | ||||| || ||||||||| ||| | Sbjct 11809 CTCTTCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAGAAGGCCGATTGGGCTCTGAGG 11868 Query 102150 TGGTTTG-ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| ||| | | | | || | || || ||||| | |||| || || |||||| Sbjct 11869 TGGATTGCAAATAGGGAAGC-TAGCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGA 11927 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267 ||| |||||||||||||||| ||| ||| | || | |||||| |||||||| ||||||| Sbjct 11928 AGGTGTCTTCTTCTCTGGTTCATTC-GCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCA 11986 Query 102268 TGCCAGGTCTC 102278 |||| |||||| Sbjct 11987 TGCCCGGTCTC 11997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620634468415200