Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq116 105 8e-18 seq765 87.8 2e-12 >seq116 Length=136166 Score = 105 bits (116), Expect = 8e-18 Identities = 411/642 (64%), Gaps = 13/642 (2%) Strand=Plus/Minus Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 |||| || | || ||||||||||| | | || ||||||| ||| | ||||| | Sbjct 11258 GACCCTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCCCAGCAATCAGCCA 11199 Query 110561 GACCC-----TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCT 110615 ||||| |||| || || || || || |||||| || | | | |||||| Sbjct 11198 GACCCGGACATTCG---TGAGGGTCCATAAAAGT--CCAATTCTCATCGTTTTGAACCCT 11144 Query 110616 CTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTC 110675 || ||| || || || |||||||| | ||| | || || || | |||| ||| || Sbjct 11143 CTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTC 11084 Query 110676 ATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG 110735 | | || ||| || || |||| || | || || ||| | ||||| ||||| || Sbjct 11083 AGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAG 11024 Query 110736 ATAGACAGCGATGGATCCCTTACGACGAC--CCGCCTGGTTA-ACATAGCGTGCTGTGGC 110792 |||| || | | || ||| | || ||| | | ||||| | || ||| Sbjct 11023 GTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCT 10964 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 |||||| || | ||||||||||| | |||| ||||| |||||| || || ||| Sbjct 10963 ATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAA 10904 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 | ||| ||||||| || | || | |||||| || || || ||| ||| Sbjct 10903 AGTACCCTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAAT 10844 Query 110913 TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 | ||||||| | |||||||| | || ||||| ||||| || |||| | | || Sbjct 10843 TAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAT 10784 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 || || || |||| |||||| || ||||||| ||||||||| || || | || Sbjct 10783 GAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGC 10724 Query 111033 ATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTT 111092 |||| ||||| ||| |||||| | || || || | || | | ||| Sbjct 10723 ATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACC 10664 Query 111093 ACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 ||||||||| || | || || ||||| ||||| | ||| || Sbjct 10663 ACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGG 10622 >seq765 Length=56575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 11663 CCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGG 11722 ||||||| || ||||| |||||| || ||||||||||| | ||||| || |||| Sbjct 42373 CCGAACGTTTTCCACCGATAGCGTCGATTTCATCGATGAAGAGAATACAGGGCGCCTTGG 42314 Query 11723 CACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 ||| || || ||| | || || ||||| || | |||||||| || ||||| |||| Sbjct 42313 AACGGGCTTGACTGAACATGTCGCGAACACGTTTTGGGCCAACACCGACAAACATTTCAA 42254 Query 11783 CGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 ||| || || | || || | |||||| || || | ||||| || | ||| | Sbjct 42253 -GAAATTCAGAGCCTGAGACGGAGAGGAAGGGTACGTTGGCTTCACCGGCTGTTGCTTTA 42195 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || || |||||||| || || || |||| ||| Sbjct 42194 GCCAGAAGAGTCTTTCCTGTGCCTGGTGGACC 42163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588873591798000