Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq116 159 4e-34 seq2517 89.7 6e-13 >seq116 Length=136166 Score = 159 bits (176), Expect = 4e-34 Identities = 444/678 (65%), Gaps = 11/678 (2%) Strand=Plus/Minus Query 106676 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGA 106734 || ||||| || || ||||| |||||||| ||||| || |||| ||| | || || | Sbjct 11259 CGACCCTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCC-CAGCAATCAGC 11201 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 ||||| || | || || | || || ||| | || | | | ||||| || Sbjct 11200 CAGACCCGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTG 11141 Query 106795 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 106854 ||| ||||| || |||||||| || | |||| ||||||||| ||| ||| || | Sbjct 11140 CATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGC 11081 Query 106855 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914 || ||| || | || | ||||| || || ||| | ||||| || ||||| || Sbjct 11080 CCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTA 11021 Query 106915 GACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGC 106968 || ||| | || || ||||| ||| |||||| |||||| | || ||| Sbjct 11020 GATTGCAAAAGCACCAG---GACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCT 10964 Query 106969 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACG 107028 || || || || ||||| |||| | |||| |||| |||||| || || |||| Sbjct 10963 ATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAA 10904 Query 107029 AGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT 107088 || ||| | | ||| | | | ||||| || ||||| |||||| || Sbjct 10903 AGTACCCTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAAT 10844 Query 107089 TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGAT 107148 | ||||||| | || || | |||||||| | || ||| ||||| | | ||| Sbjct 10843 TAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAT 10784 Query 107149 AAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 107208 ||||| || || |||| || || |||||| || | ||||||||| ||||| | || Sbjct 10783 GAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGC 10724 Query 107209 GTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 107268 ||| ||||| ||| |||||| | || ||||| ||| ||| || | || | Sbjct 10723 ATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACC 10664 Query 107269 CCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCC 107328 ||||| ||||| | || ||||||||||||||||| ||||||| | ||| | |||| Sbjct 10663 ACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTCCCAAATCTTGCC 10604 Query 107329 ATCGAGCCGTTGAAGATA 107346 ||| || | ||||||| Sbjct 10603 ATCTTTCCTTAGAAGATA 10586 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 |||||| |||||||| ||| || || |||| ||| |||||||| || | | || Sbjct 11667 CTCAACTGGATAAAAGCATCTATCGATAACTCTGTTGAGATTTTTAGTGATGACACCAGT 11608 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 106461 | | || || | ||| |||| ||||| | || ||||||| | ||||| || Sbjct 11607 TACATACTGCAGCTGATCAAAATCGAAAGTCTTCGCCTTAGTATTGACAAAATTTGGCAG 11548 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 | ||||| |||||||| || || || ||||| || | | || || | |||||| Sbjct 11547 TGATATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTC 11488 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || || | ||||| | ||| || || |||| || | ||||| ||| | ||||| Sbjct 11487 AGTGCAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCA 11428 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||||||||||| | |||| |||| | || |||||||| || Sbjct 11427 AGCATCCTTGTAAATCATGAAGGGATTACCAGTCTCCGTTTG 11386 Score = 93.3 bits (102), Expect = 5e-14 Identities = 319/492 (65%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTA---GATCGGAGATAGTACATCCCG 105607 |||| | |||||||||||||| || ||| | | ||| || || ||||| || Sbjct 12592 TCAATAGTGAACTGAATTGGGTCGGC---TGCAGGACGGGTTCGAAGGTAATACATACCC 12536 Query 105608 GTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGA 105667 || || || || | ||||||||||| | |||||| |||| | ||| ||| ||||| Sbjct 12535 GTTTTCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTC-CATAGTTGGG 12477 Query 105668 CT-TTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGC 105726 || || ||| ||||| | ||||||||||||||||| || |||| | ||| || Sbjct 12476 CTCTTTTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCGGC 12417 Query 105727 CATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATC 105786 | |||||| | ||| | ||||||||| || || || || ||| ||||| Sbjct 12416 AAGATCAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAGGGCCTTTATATC 12357 Query 105787 ATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCC---TT 105843 |||||| ||| | || | |||||| ||| ||| ||| | |||| || || Sbjct 12356 ATCTGGAATACCACCTATGTGTTGAATAGAA---CCCTGATTGGCAATGATTGCCAATTT 12300 Query 105844 CATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAAT 105903 | ||| |||||||| |||| | |||| || | | | || || ||||||| Sbjct 12299 GAGGGCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTGATTATTGACAAC 12240 Query 105904 CACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCA 105963 | || ||||| | ||| | | | | | || | || ||||||| | Sbjct 12239 CTGGAAATCTCCAGAGAGAACGCGACGTGAAAACACATTACTGGTAATGGGTTCAGTTGA 12180 Query 105964 TTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACT 106023 ||| | ||||| | ||||| || || || || || ||||||||||||| | ||| || Sbjct 12179 TTCGGTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGGCATTGGTGCCAAAAGAAGGCT 12120 Query 106024 GTTACGAAGACC 106035 ||| | || ||| Sbjct 12119 GTTTCTAATACC 12108 >seq2517 Length=16602 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | ||||||||||||| ||| | ||||| ||| || || ||||||||||| Sbjct 12039 GTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTGAGACCGGGCATGAGACC 11980 Query 117345 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 |||||||| | |||| | || | ||| |||||| || |||||||||| ||| || ||| Sbjct 11979 ACGCTTCTTAAGCCAAAAGATTGACGC-GAATGAACCAGAGAAGAAGACACCTTCAACAG 11921 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | || ||||| ||| || ||| || | || ||| ||| ||| Sbjct 11920 CAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCTTCCCTATTTG-CAATCCACCTCAGA 11862 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTT 117499 ||||| | |||||||||| | ||| || | |||| Sbjct 11861 GCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTTT 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589878217088400