Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1681 127 5e-24 seq2406 105 1e-17 seq13481 84.2 5e-11 >seq1681 Length=28542 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| || || ||||| |||| || || | |||||||| || ||||| || || ||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||| |||||||||||||| |||||||| || ||||||||||| || ||| || ||| Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 195070 TCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 |||||||| || ||| || ||||| || || | || || || || | ||| || Sbjct 28422 TCAATGGTATC---GCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTC 28366 Query 195127 ACGAACACTTGCATT 195141 || || | ||||||| Sbjct 28365 ACAAAAATTTGCATT 28351 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || ||||| ||||||||||| || | ||| || | || ||||| Sbjct 24263 ACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCC 24322 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||||||| ||||| || || || || || ||||| ||||| ||||||||||| || Sbjct 24323 AGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGG 24382 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| || |||||||| ||||| Sbjct 24383 ATCTTCGCCTTCACATTCTCAATCGTGTC 24411 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || || || ||||| |||||||| || | | ||| | Sbjct 24810 GAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCG 24869 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || | || || ||||| |||||||| || || || ||||||||||| ||||| Sbjct 24870 GCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTC 24929 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| || ||||| || || || | || |||||||| || Sbjct 24930 CTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGT 24989 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | ||| ||||| || | ||||| Sbjct 24990 AATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq2406 Length=17766 Score = 105 bits (116), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| |||||||| || || || | |||||| | |||||||| Sbjct 17654 ACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTACGACCATCTTCC 17713 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 || ||||| || || |||||||| || ||||||||||| |||||||| || || Sbjct 17714 AGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCCTCCTT 17766 >seq13481 Length=537 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 ||||| ||||| || || ||||||||||| ||||||||||| || || || || || Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 |||||||| || || | || |||||||| |||| || ||||| || | ||| ||| Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 195127 ACGAACACTTGCAT 195140 || || | ||||| Sbjct 417 ACAAAAATCTGCAT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109283866108970