Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1681 109 4e-19 >seq1681 Length=28542 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| ||||| || || || ||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | ||||||||||| |||||| || || || Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTAC--AT 28425 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | | |||||| |||| || || ||||| || || |||||||||| Sbjct 28424 TCTCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCA 28365 Query 34969 CAAAGATCTGCAT 34981 |||| || ||||| Sbjct 28364 CAAAAATTTGCAT 28352 Score = 89.7 bits (98), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||||||||| | || | || ||||| || || || || || Sbjct 24280 TTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAA 24339 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| || || ||||| ||| | || | || || ||||| |||||| || || | Sbjct 24340 TATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCAC--A 24397 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| |||| | ||| || || | ||||| ||||| |||||||| || ||| Sbjct 24398 TTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTC 24457 Query 34968 AC 34969 || Sbjct 24458 AC 24459 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || ||| || || || || |||||||| | | || |||| Sbjct 24816 CAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATC 24875 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | ||||| || ||||| || || || ||||| ||| | || | || |||||||| Sbjct 24876 CTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTC 24935 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| || || || || || | || | | ||| || || | || ||| Sbjct 24936 CTGGATCTTCGCCTTAAC--ATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATG 24993 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || |||||||| ||||| |||||||| Sbjct 24994 GTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||||||| ||||| ||| | || | ||||||||||| |||||| ||| || || Sbjct 24670 ATTAGTCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCAC--AT 24727 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| |||| | ||| || || | ||||| ||||| |||||||| || |||| Sbjct 24728 TCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCA 24787 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 24788 CAAAGATTTGCAT 24800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324578565474480