Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq116 219 5e-52 >seq116 Length=136166 Score = 219 bits (242), Expect = 5e-52 Identities = 425/622 (68%), Gaps = 4/622 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || |||||||| | ||| ||| || | ||||| |||||| |||| || || |||| Sbjct 11196 CCCGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTGCATA 11137 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | ||||| ||| ||||| | | || ||| || Sbjct 11136 AAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGCCCCG 11077 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | ||||| ||||| | || | || | ||||| |||||| ||||| | || ||| Sbjct 11076 GTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTAGATT 11017 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || ||||| || |||||||||| |||||| || || | || | Sbjct 11016 GCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATTGAAC 10957 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| || || | ||||| ||| |||||||||||| |||||| || | || Sbjct 10956 ACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGTACC- 10898 Query 48456 CTAGCT-CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || ||| | || | || || ||| || || || || | || || |||| || Sbjct 10897 CTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAAGGC 10838 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 |||| |||| || ||||| || || || || ||||| ||||| |||| | | || || Sbjct 10837 ACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAGGAA 10778 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| || |||| ||| ||| ||||| ||||| || | ||||| || |||||| | Sbjct 10777 ACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGT 10718 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGAT 48693 ||||| || | || | || | ||| || |||| ||| || | ||| ||| | | Sbjct 10717 GAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCACCG-T 10659 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 | || || | || |||||||| ||||| | ||| ||||| || ||| ||| || | Sbjct 10658 GAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTCCCAAATCTTGCCATCTT 10599 Query 48754 TTTTCAAAAGATATGATTTTTC 48775 | | | |||||| |||||||| Sbjct 10598 TCCTTAGAAGATAAGATTTTTC 10577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562011063332400