Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2517 147 3e-30 >seq2517 Length=16602 Score = 147 bits (162), Expect = 3e-30 Identities = 358/535 (67%), Gaps = 22/535 (4%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || |||||| || ||||| ||||||| || ||||| |||||| || || Sbjct 12056 AAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTG 11997 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| | ||| | || |||| |||||| |||| || || || ||||| ||| Sbjct 11996 AGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAG 11937 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA---AGTTGAACTATAA 37349 || | ||||||||| || || || || |||| ||| || | || | |||| Sbjct 11936 AAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCTTCCCTATTT 11877 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 || ||||| | | |||||| ||||| || ||||| || ||||||||| Sbjct 11876 GCA---ATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTTTCAATT 11820 Query 37410 GCTTTTAAGAGAAAGt----ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || || ||||| || | ||| | | | ||| || ||||| || || || | Sbjct 11819 GCATTGAAGAGGAAATCACGTTTGGCCGGCTC---CTGA-ATGTAAGTGTCGATGAGGAG 11764 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 | ||||||||| ||||| || || |||| || || || | |||||| ||||| | ||| Sbjct 11763 AGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAACGAGC 11704 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCAT 37584 ||| | | |||||| || | | || || | || || |||||||| || || |||| Sbjct 11703 TTCGGGCACTTGAACTTCTTGGCAGAAGTTCAT-GCAGAGATTTTCATTGACGATACCAT 11645 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTGATA 37641 | || || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 11644 CGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCATTC---A 11588 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | | | ||| || | | |||||| | |||||||| || ||||||||||| || Sbjct 11587 GTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAA 11533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592213810916400