Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq109 147 2e-30 seq1681 129 5e-25 >seq109 Length=140612 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| |||||||| || || || |||||||| | || ||| | | | Sbjct 74645 ACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCC 74704 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || || || |||||||| || ||||| | ||||| || || || Sbjct 74705 ATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTT 74764 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||| ||||||| || ||| | || | | || | | || ||||||||||||| Sbjct 74765 ATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGAT 74824 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| ||||| ||||| ||||| |||||||| Sbjct 74825 AGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq1681 Length=28542 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||||||||| ||||| |||||||| || | | ||| | | | Sbjct 24813 ACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCC 24872 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| || |||||||| || | |||||| ||||| || ||||| ||||| || Sbjct 24873 ATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTT 24932 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || | || |||||||| || | Sbjct 24933 GTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAAT 24992 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| ||||| | ||| |||||||| |||||||| || Sbjct 24993 GGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCATCGT 25031 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| ||||||||||| || |||||||| || | | || | | || |||| ||| Sbjct 24268 ATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCCAGTTG 24327 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || ||||| | |||||| ||||| || ||||| |||||||| || || || || Sbjct 24328 CTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTT 24387 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| || ||||| || | ||| | ||||||||| || Sbjct 24388 CGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGT 24447 Query 101446 TAAAGTTTTTAC 101457 | ||||| || Sbjct 24448 GAGTGTTTTCAC 24459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396211219665870