Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq109 98.7 8e-16 seq1681 86.0 5e-12 >seq109 Length=140612 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || || || || |||||||| || ||| | || Sbjct 74643 AGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGG 74702 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || |||| || || ||||| | |||| |||||| Sbjct 74703 CCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCC 74762 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || | ||| || || ||| | | | | |||| | ||| || || | || Sbjct 74763 TTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTG 74822 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || || ||||| ||||||||||||||| Sbjct 74823 ATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCATC 74861 >seq1681 Length=28542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | ||| || || ||||| ||||||||||| || || Sbjct 24245 CCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAA 24304 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||||| || ||||| || ||||| ||||| | ||| Sbjct 24305 AGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGA 24364 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| || ||| | | | || || ||||||| Sbjct 24365 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACC 24424 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 |||| || |||||||| ||||| | ||||| || Sbjct 24425 TCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380873020362930