Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2517 138 2e-27 >seq2517 Length=16602 Score = 138 bits (152), Expect = 2e-27 Identities = 379/575 (66%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 ||| || |||||| || || ||||||| || || || ||||| || | | | || || Sbjct 12061 AGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGA 12002 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | |||||| ||||||| || | || || ||||| || |||| |||||| || |||| Sbjct 12001 AAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAG 11942 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 ||||||||| || || || || ||||| ||| | | |||| || | ||| | | Sbjct 11941 AGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCTTCCC 11882 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 | | || ||||| || ||||| || ||||||||||||| || || | || || | Sbjct 11881 TATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTTTCAA 11822 Query 48363 TGGCCCGGAAGAGCTTCTTGCAC---TCACCTGCGTCCGCAACATAGGTAGTGAGCAGCT 48419 | || |||||| | ||| | || || ||| || || || || || Sbjct 11821 TTGCATTGAAGAGGAAAT--CACGTTTGGCCGGC-TCCTGAATGTAAGTGTCGATGAGGA 11765 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||||| || ||||| | ||||| | || || || | || ||||| | | Sbjct 11764 GAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAACGAG 11705 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTC-TCCAGCAGATTCTCATTGACTATCCCA 48538 | || ||| || |||||| | |||| || | ||| ||||| |||||||| || ||| Sbjct 11704 CTTCGGGCACTTGAACTTCTTGGCAGAAGTTCATGCAG-AGATTTTCATTGACGATACCA 11646 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 || |||||||||||||| || || || || || || |||||| || | || Sbjct 11645 TCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCATTCAGT 11586 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | |||| | | |||||| ||| || || ||||| || ||||||||||| ||| Sbjct 11585 CTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGGAAGCG 11526 Query 48659 AGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || || ||||| | |||| || || |||| Sbjct 11525 ACAGCCTTCTTGTAGAATTCCCAGATATCGTGATA 11491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931370829734400