Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq116 96.9 6e-15 >seq116 Length=136166 Score = 96.9 bits (106), Expect = 6e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 222028 TTTGA-CCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCC 222086 ||||| |||||||||| || || || || ||||| || ||| ||| |||||||| || | Sbjct 11153 TTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTAC 11094 Query 222087 GCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCC 222146 | |||||| | ||| |||| | | ||| |||| |||| || | |||| |||| Sbjct 11093 GAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCC 11034 Query 222147 ACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 | || || || |||| || | ||| || || ||||| |||||||| ||||| || Sbjct 11033 AGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTAC 10979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928683297110400