Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1681 86.0 5e-12 >seq1681 Length=28542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| || | || || ||||||||||| ||| || ||| Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| || ||| | || |||||| Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||||||||| || ||| ||| || | || || || Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||| |||||||| || ||| |||| || Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTT 24817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425332681921890