Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3050 129 8e-25 >seq3050 Length=12077 Score = 129 bits (142), Expect = 8e-25 Identities = 362/562 (64%), Gaps = 39/562 (7%) Strand=Plus/Plus Query 47793 GGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATA 47852 ||||||||| |||||| |||| || |||||||| ||||| | |||||| || | ||||| Sbjct 3255 GGCAATAACTAAATCAACAGGCTCATCTTGTTGCAGCATAAGCCACATCGCGTAAACATA 3314 Query 47853 ATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTG 47912 ||| |||| ||||| ||||| |||| ||||| || || | | | ||||| Sbjct 3315 GTCTTCAGCATAGCCCCAATCACGTTCGGCATTGAGATTACCAAGTTCAATAACTTCTTG 3374 Query 47913 CTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACC 47972 ||||| | ||| | ||| | || || |||||||| |||||||| | || Sbjct 3375 TTTACCGTATTTAATTTGGGCGACTGCACGGGTGATTTTACGAGTGACAAAAGTCTTTCC 3434 Query 47973 ACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTC 48032 || | |||| ||||||||||| ||||||||| |||||||| | || || ||| Sbjct 3435 TCGGCGTGGACTCTCATGATTAAAGAGAATACCATTACAGGCAAATATATTATAGCTTTC 3494 Query 48033 ACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGC--------------------- 48071 ||||| ||| || ||||| || ||||||| || || Sbjct 3495 CCGATAATTCACAACAATCCAATAGGCATAGAGCTTAGCGGCACCTGGAAAGGTTCGAGT 3554 Query 48072 -------AACACCA---------TAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCT 48115 |||| || || |||||||||||||||||||| || || || ||| Sbjct 3555 GAAGAATAACATCAAACTTACTGTACGGAGAACGTGGATAGAAAGGAGTAGTTTCCTTCT 3614 Query 48116 GTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCC 48175 | || |||| || || ||| | || || || || || |||||||||| || || Sbjct 3615 GAGGTATCTCGGCAACTTTGCCAAAGAGCTCGCTAGTAGAGGCTTGATAGAAGCGGACAG 3674 Query 48176 TATCTTCCATCTCAAGCA-AACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCT 48234 | | | || | |||| |||||| ||| ||||| | || || || || || | Sbjct 3675 T-TTTCTCAAGACCAGCAGAACGGATTGCTTCAAGAAGTCGTGTTGTACCAATACCAACA 3733 Query 48235 GTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGA 48294 | ||| ||||| ||| || || || ||||| | || || || || ||||| Sbjct 3734 ACATCACCGGTATATTCGCTCAATTCGAAAGAAACTTGAACGTGTGATTGAGCAGCAAGA 3793 Query 48295 TTATAAATCTCATCTGGTTGAA 48316 || |||| |||||| |||| || Sbjct 3794 TTGTAAACCTCATCGGGTTTAA 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665378687161200