Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq116 122 1e-22 seq194 116 4e-21 seq2517 89.7 6e-13 >seq116 Length=136166 Score = 122 bits (134), Expect = 1e-22 Identities = 196/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 || ||||||||||| | || | ||| |||||||||||||||| || | || ||| Sbjct 11386 CAAACGGAGACTGGTAATCCCTTCATGATTTACAAGGATGCTTGCAATAGAAAATCCAAC 11445 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || | || |||| ||||||||| |||| ||||||||||| |||||| | || || | Sbjct 11446 CATCAACATCTGGGTACAATCAAGTGCTCCAATCTTTGCACTGAAATTGTTGAATATAGT 11505 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT 76078 | || ||||| || || || |||||||| ||||| | || ||||| | ||||||| Sbjct 11506 TCTCCCGAGGAGACTGCCGTGTGTAATTTGGCTTCAATATCACTGCCAAATTTTGTCAAT 11565 Query 76079 GAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAA 76138 || | ||||| |||| ||| | || || | | || | | || ||| Sbjct 11566 ACTAAGGCGAAGACTTTCGATTTTGATCAGCTGCAGTATGTAACTGGTGTCATCACTAAA 11625 Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAG 76180 ||||| ||| |||| || || ||| |||||||| |||||| Sbjct 11626 AATCTCAACAGAGTTATCGATAGATGCTTTTATCCAGTTGAG 11667 Score = 107 bits (118), Expect = 2e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 76703 GGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTG 76762 ||||| |||||| | || | ||| ||||||||||| ||| || || || || Sbjct 12324 GGTTCTATTCAACACATAGGTGGTATTCCAGATGATATAAAGGCCCTTTATAAGACTGTC 12383 Query 76763 TGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGAT 76822 ||||||||| | |||| | ||||| | ||||||||||||| || |||||||| Sbjct 12384 TGGGAAATCCCGCAGAAAACGATTATTGATCTTGCCGCAGATCGTGCTCCGTTCATTGAC 12443 Query 76823 CAAAGTCAAAGTATGAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTAT 76881 || ||||| | ||||| ||| || || ||||| ||| ||| | |||| || Sbjct 12444 CAGAGTCAGTCACTAAATCTCCACATAAAAGAGCCCAACTATG-GAAAGATTACTTCCAT 12502 Query 76882 GCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGGC 76941 |||| | ||||||||||| ||||||| ||||| || ||||| || || ||| | | Sbjct 12503 GCATTTCTACGCGTGGAAGAAGGGGCTGAAAACGGGTATGTATTACCTTCGAACCCGTCC 12562 Query 76942 GAAAGCCCGACCAATTCAGTTCA 76964 |||| ||||||||||||| Sbjct 12563 TGCAGCCGACCCAATTCAGTTCA 12585 >seq194 Length=114854 Score = 116 bits (128), Expect = 4e-21 Identities = 117/150 (78%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTAC--GGCA--CAATCTGGAAAGTG 13608 |||||||| ||| ||||||| |||||| | ||||| || || | |||| || || Sbjct 12697 GGTATTCCGAAGCTGGATGATGCGAACGATGCGGGAACAAGGAATTCAATT----AACTG 12752 Query 13609 TACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGT 13668 |||||||||| |||| ||||| ||||| || |||||||| || || || |||||||| || Sbjct 12753 TACTCTCATTCTCACCGAGGGAGATTCAGCCAAAACCCTAGCAGTGGCTGGTCTCTCAGT 12812 Query 13669 CGTTGGTCGTGATCACTACGGTGTGTTCCC 13698 || |||||||||| || ||||| ||||| Sbjct 12813 GGTCGGTCGTGATCGATATGGTGTCTTCCC 12842 >seq2517 Length=16602 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 65003 AAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGT 65062 |||| | || ||| | |||||||||| | ||||| ||| ||| ||| || | || Sbjct 11825 AAACCCTTCCCTGTGTCAAGAAGAAGGCCGATTGGGCTCTGAGGTGGATTG-CAAATAGG 11883 Query 65063 CTCGCTC-CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121 ||| || ||| ||||| || | || || || ||| || ||| |||||||||| Sbjct 11884 GAAGCTAGCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCT 11943 Query 65122 GGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 || |||||| ||| | || | |||| | |||||||| ||||||||||| || || || Sbjct 11944 GGTTCATTC-GCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCATGCCCGGTCTCACTTT 12002 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | ||||| | ||| ||||||||||||| | ||| Sbjct 12003 CAGTAATGAGTTGATTAGCCGAGATGAGGGTTTGCAC 12039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596465871460800