Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1681 104 4e-17 seq13481 89.7 9e-13 >seq1681 Length=28542 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || || || | ||| ||||||||||| || ||||| || | | | Sbjct 24847 ATATTGTAGTCCGACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGC 24906 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| || || || || || | || | ||| || ||| Sbjct 24907 TGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTA 24966 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| || ||| ||||| || || || ||||| || || || || |||||||| || ||| Sbjct 24967 TCGCTAGGCTCGACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGC 25026 Query 193359 AT 193360 || Sbjct 25027 AT 25028 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || | ||| || || ||||| || | | Sbjct 28533 ATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGT 28474 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || || || || ||||| || || | |||| ||| ||| ||| Sbjct 28473 TGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATGGTA 28414 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| | ||||||||| ||||| ||||||||||| || || || || ||||| |||||| Sbjct 28413 TCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACAAAAATTTGC 28354 Query 193359 ATT 193361 ||| Sbjct 28353 ATT 28351 >seq13481 Length=537 Score = 89.7 bits (98), Expect = 9e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 || |||| || ||| ||||| ||||| ||||||||||| || || || || | ||| | | Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 || ||| ||||| || ||| ||||| || || || ||||| || || || || ||| Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 193347 ACAAATATTTGCAT 193360 ||||| || ||||| Sbjct 417 ACAAAAATCTGCAT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899497972591200