Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2517 87.8 3e-12 >seq2517 Length=16602 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || || ||||||||||| ||||| ||||||| | || || || ||||| || || Sbjct 12056 AAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTG 11997 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | |||||||| | ||| | || || |||||||| || || ||||| || ||| ||| Sbjct 11996 AGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAG 11937 Query 18275 AATATACCCTCAAC-GCACGCGAACGC 18300 || | ||| ||||| ||| ||||| || Sbjct 11936 AAGACACCTTCAACAGCA-GCGAAGGC 11911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731744745756000