Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq109 123 5e-23 seq1681 95.1 2e-14 >seq109 Length=140612 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||| |||||| | |||||| || || || || | |||| || || ||| || ||| Sbjct 74628 ATAACACCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAA 74687 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | || || |||| ||||||||||| || || || || || | || ||||| Sbjct 74688 TCCGAGAGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCT 74747 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 | || || || || |||||| | |||||| || ||||| ||| |||||| | Sbjct 74748 GAAGGAATACCCTCCTTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGC 74807 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||| |||||||| ||||| | ||| |||||||| Sbjct 74808 TCAACTTCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq1681 Length=28542 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || || || | |||| || || |||||| || || Sbjct 24799 ATGCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCC 24858 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || |||||||| || |||||||| | | ||| ||||| || Sbjct 24859 GACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGA 24918 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || ||||| || | ||| | || Sbjct 24919 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCG 24978 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||||||||| || || | || || | ||| |||||||| Sbjct 24979 ACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984304544128500