Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq109 102 1e-16 >seq109 Length=140612 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171836 CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 ||||| |||||| | ||| || || || || || | |||| || || || || || Sbjct 74627 CATAACACCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTA 74686 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||| || | || || | || ||||||||||| || || ||||| || | || || || Sbjct 74687 ATCCGAGAGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATC 74746 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 | || || || || |||||| | |||||| || ||||| ||| ||||| | Sbjct 74747 TGAAGGAATACCCTCCTTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGG 74806 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| ||||| || ||||| |||||||| ||||| | || |||||||| Sbjct 74807 CTCAACTTCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904978619478000