Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2142 118 3e-21 seq66 100 8e-16 seq116 98.7 3e-15 >seq2142 Length=21334 Score = 118 bits (130), Expect = 3e-21 Identities = 222/322 (69%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | |||||| ||||| ||||||||| | ||| || ||||| ||| Sbjct 15134 TCCATAGCTTTGATAAGACGACGTTGAATGTAACCAGTTTCGGCTGTCTTGACAGCGGTA 15193 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCC 302692 ||||| ||||| ||||||||||||| |||||||| || | ||| || ||| || | Sbjct 15194 TCAATCAGACCTTCACGACCACCCATGGCATGGAAAAAAAACTCAGTTGGAGTC--AGGC 15251 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTA 302751 | ||| | |||| |||| || || || | | ||| || | |||| |||| | Sbjct 15252 CGGCAAGATAGGAATTCTCCACAAAGCCTCTAGACTCAGGACCGTAGTCG-TCTTGAATG 15310 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | | | | || | || || || || || || ||||||||| Sbjct 15311 AAATGAGGAAGCGTACGATGGCGAAAACCAAAGGGAATTCGTTTACCCTCCACGTTCTGC 15370 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTT 302871 || |||| || | ||| | ||| || ||||| | | | |||||| || |||||| Sbjct 15371 TGACCCACACAGGCAATAACCTGGGAGATATTGATTTGAGAGCCCTTTGAACCAGCAACA 15430 Query 302872 ACCATAATAACAAACCTGTTAT 302893 ||||||||| || |||||| Sbjct 15431 ACCATAATATTGAAGTTGTTAT 15452 Score = 98.7 bits (108), Expect = 3e-15 Identities = 494/761 (65%), Gaps = 47/761 (6%) Strand=Plus/Plus Query 303592 GCTAATAGACGCAGTTCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCA 303651 |||| | ||| | ||| | || || ||| || || || | ||| | ||||| ||| Sbjct 16184 GCTAGTTGACTGATTTCCGCCTTTGTTTCCACAGACTGAGGTAAATGAAGGTTCATTTCA 16243 Query 303652 TCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCA 303711 ||||| |||||||| || || || || ||| | | | || | ||||||||| | Sbjct 16244 TCACCATCAAAATCTGCGTTGTAGGGTGAGGTGACAGACAAATTGAGACGGAAAGTAG-A 16302 Query 303712 CCCTGCATCATAACACGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGA 303771 || | || |||||| | ||| ||||||||||||||| |||| |||||||| || Sbjct 16303 CCAGGG--CAAAACACGAACACGATGGCACATCATAGACATTTTGTGCAGAGTTGGTTGG 16360 Query 303772 CGATTGAAAAGCACGGGGTCACCGTTTAATACATGACGATGAACCTTATCTCCGTCCTCT 303831 |||||||| | ||| |||| | || || | |||||| | ||| | | || | | Sbjct 16361 CGATTGAATACCACAAAGTCATCATTCAACATATGACGTTCAACGATGTAGCCAACTTGC 16420 Query 303832 AAA---ACAATAGAGTCCCTATCTA-CATATCGCAGACTGATACAATCGCCGTTCTTCTT 303887 | | | | ||| | | | | |||||| | | ||||| ||| ||||| | Sbjct 16421 AGAGTTAAATCAGA-TATTTGTGGATGATATCGAATATCGATACGATCACCGTT----AT 16475 Query 303888 CTCGTA----AATTTTGGCTCCTGGATATACATCAGGACCGTTCTTGATAAAGGTCATT- 303942 |||| | || ||| |||||||| |||||| | || || || | || || || Sbjct 16476 CTCGAACAACAAATTTAGCTCCTGG--ATACAT-GGTTCCATTATTTACCAA--TCTTTG 16530 Query 303943 -AAATACTGCTTGTTC-CTTGAGTTCACCGTCACTGGCTTGGTTAAATTCTTGGCGATTT 304000 | || | | ||| ||||||| ||| | || || | ||||| ||| || Sbjct 16531 CAGGTAGTCAATATTCGCTTGAGTGACTCGT-TCAGGGAAAGTGAGATTCTGGGCAATCG 16589 Query 304001 TCAGCGGAACGCCTAACTCGCT-AATGGATAAGTTGGGGTCAGGTGTAATTACAGAGCGA 304059 | ||||| || |||| | | || || ||||| || |||| ||||| || | ||| Sbjct 16590 AACGAGGAACTCC-AACTTGATCAAGGGCCAAGTTAGGATCAGCGGTAATGACTGTTCGA 16648 Query 304060 GCACTAAAATCAACACGCTTACCCATAAGATTACCCCTAACACGACCGCCCTTACCGTTT 304119 ||| |||||||||||| || ||||| | ||||| |||| |||||| | || || ||| Sbjct 16649 GCAGAAAAATCAACACGTTTGCCCATCAAGTTACCTCTAATACGACCAGCTTTGCCTTTT 16708 Query 304120 AGCCTATCCTTGATTGCCTTCAGGGGGCGACCCGAACGCTGGGCTACAGCC----GCAAC 304175 || | | || || | ||| ||||| | || || || | |||| |||| Sbjct 16709 AGACGCTGTTTAATGGACTTAAGGGGCCTTCCAGA---CTTTTGAATAGCCTTTGGCAA- 16764 Query 304176 GCCAGGAATCTTATTGTCTACCAGCGTCGCAACATAATATTGCAGCACTGTCGACCAATC 304235 |||||||| | || || | || || ||||||| |||||||| | | || | ||| Sbjct 16765 ACCAGGAATATCGTTATCAATAAGAGTGGCAACATGATATTGCA--AAT-TCCTCACATC 16821 Query 304236 GTCAAT-TACATTTGAG--TTAG---CATTTTGCTCAATCTTCTCTTGAAGTGTTTTGTT 304289 ||||| | || |||| || ||||||| || ||| || ||||| || || Sbjct 16822 TTCAATCAAAATATGAGCAGCAGCTCCATTTTGTTC-ATCACGTCGCAAAGTG--TTATT 16878 Query 304290 AGCCTTGATAATATTCACAATGATATGTGTTAAATCGTCCT 304330 |||||| || |||| ||| |||| |||||||| |||| Sbjct 16879 AGCCTTTATGATATCTGCAAGTTTATGAGTTAAATCATCCT 16919 >seq66 Length=170536 Score = 100 bits (110), Expect = 8e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| | |||| ||||||||| |||||||||||||| || | ||| ||||| | Sbjct 160302 TGCACCGTGAGCAATCTGACAATCACGTTCCATTTCACCGAATCGCAAACCGCCATCTCT 160243 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | | |||||| ||| ||||| ||||| | | |||||| || ||| || Sbjct 160242 TGAACGACCCTCCATAGGTTGACGGTTGAGAATTTGTACAGGACCACGAGAACGGGAGTG 160183 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 |||||||| |||||||| || | ||||||||| | | |||||| | |||||| | Sbjct 160182 GATCTTATCATCCACCATATGTTTCAATCGCTGGTAGTACGTGGGACCCAAGAAGAT-TT 160124 Query 251664 CGAAG--GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCA 251712 | || | || || ||| || | | |||| ||||||| ||| || ||| Sbjct 160123 GGGAGTTGAGCTTTCT-TCCGGTGAAACCGTTGTACATAATTTCATTGCCA 160074 Score = 86.0 bits (94), Expect = 2e-11 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||||||| ||||||||||||||||||||| | |||| ||| ||||| || Sbjct 160301 GCACCGTGAGCAATCTGACAATCACGTTCCATTTCACCGAATCGCAAACCGCCATCTCTT 160242 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCT--TGGACCCTGAGCACGATAAT 233390 || | ||||| | | |||||| ||| | | | || | ||||| ||| ||| | | Sbjct 160241 GAACGACCCTCCATAGGTTGACG-GTTGAGA-ATTTGTACAGGACCACGAGAACGGGAGT 160184 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTC 233420 || ||||| | |||||||| |||| || Sbjct 160183 GGATCTTATCATCCACCATATGTTTCAATC 160154 >seq116 Length=136166 Score = 98.7 bits (108), Expect = 3e-15 Identities = 262/395 (66%), Gaps = 13/395 (3%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 ||||||| | ||| ||| | || || || | ||| | | | ||||||||| || Sbjct 11089 CTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGG 11030 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGC 156085 || || || || |||||| |||| | ||| |||||| ||||||||||| | ||| Sbjct 11029 TTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGC 10970 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || ||||||| || | |||||||||| | |||||||| ||||||||||| Sbjct 10969 GGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGA 10910 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-- 156203 |||| | ||| |||| ||||| || || ||||| || || | ||| Sbjct 10909 AATAAAAGTACCCTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCC--AGCATTC 10852 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || |||||| || || | || | |||| | | ||||| |||||| ||||| | | Sbjct 10851 TTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTC 10792 Query 156264 AT--TGAT-AGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320 || |||| || | | ||| || | |||||| ||||||||| | ||||| || Sbjct 10791 ATTGTGATGAGGAAACAGCTTGA---CAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGA 10735 Query 156321 GTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || || | |||||| | || |||| | |||||| Sbjct 10734 GTTGGGGAAGCATGAGTGAACCACTTTTGAGACAT 10700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471555289907670