Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10959 120 4e-21 seq286 113 6e-19 seq2517 104 3e-16 >seq10959 Length=794 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| || ||| ||||| || ||||| |||||||| | || Sbjct 550 GCTTGGCCAACTCACCGGGCAAGAGCAGACGCACTGCCGTCTGAATCTCGCGACTTGTGA 491 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| ||||||||| || | | ||||| | |||| || |||| | Sbjct 490 TGGTGGACTTCTTGTTGTAGTGCGCCAATCGACTCGACTCGGCGGCGATACGCTCGAAGA 431 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| | ||| ||||||||| |||||||| Sbjct 430 TGTCATTCACGAAGGAGTTCATGATGGACATAGCCTTCGAGGAGATGCCTGTGTCGGGGT 371 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || ||||||||||||||| Sbjct 370 GGACTTGACGCAGCACCTTGTAGATG 345 >seq286 Length=97748 Score = 113 bits (124), Expect = 6e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1592114 ACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTT 1592173 ||||| || ||||| ||||| |||| ||| | ||||| || || |||||| Sbjct 8333 ACCGATGATATCTCCAGCTGGGATCAGGAATTTCTCCGTGTCGATCAAGGAACTCTCTTT 8274 Query 1592174 GAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAG 1592233 ||| | || | ||||| ||||||||||| || ||| ||| |||||| | ||||| Sbjct 8273 GAGCTCATTTTGGCCGCAAACTACCTCGATATTAAGGGTCTTCTCGATACCTGCTGCAAA 8214 Query 1592234 TCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 || || || |||||||||||||| ||| |||||||||| || || || ||||| || ||| Sbjct 8213 TCGGTTGCTAACATGATCAAGGGAAAGACGCCCGAGGAAATTCGGAAAACCTTCAATATC 8154 Query 1592294 AA 1592295 || Sbjct 8153 AA 8152 >seq2517 Length=16602 Score = 104 bits (114), Expect = 3e-16 Identities = 197/285 (69%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| || || || || |||| || || || || | ||| ||||||||||| || Sbjct 12038 TGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTGAGACCGGGCATGAGACCA 11979 Query 869234 CGCTTCTTGAGCCAAAAGA-TGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||| |||||||||| || ||| ||| || ||||| |||| || || || || Sbjct 11978 CGCTTCTTAAGCCAAAAGATTGACGC-GAATGAACCAGAGAAGAAGACACCTTCAACAGC 11920 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 || ||| ||| | ||||| || || | | |||| ||| |||||| ||| Sbjct 11919 AGCGAAGGCGACAACACGCTCTGCGTAG--CTAGCTTCCCTATTTG-CAATCCACCTCAG 11863 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 ||||| |||||||| ||| | || | || | || || || || |||||| || Sbjct 11862 AGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTTTCAATTGCATTGAAGAGGAAATC 11803 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||| |||| | || |||||||| ||||| ||||| Sbjct 11802 ACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATGAGGAGAGAATA 11758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105997680259470