Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1681 147 2e-30 seq109 114 1e-20 seq13481 84.2 2e-11 seq10106 82.4 7e-11 >seq1681 Length=28542 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || || ||||| ||||| ||||| || ||||| || | Sbjct 25031 ACGATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCT 24972 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| ||| | || | || || |||||||| ||||| |||||||| ||||| ||| Sbjct 24971 AGCGATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGAT 24912 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| | |||||||| || ||||| | |||||| | | |||| || || Sbjct 24911 CAGCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTAC 24852 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||||||||| || || |||||||||||||| | || || ||| Sbjct 24851 AATATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGC 24801 Score = 100 bits (110), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 24696 TTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||||| ||||| || ||| | || || || || ||||||||||| || |||||||| | Sbjct 28346 TTGATA--ATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTG 28403 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 | | | ||| || | || | ||||| ||||| |||||||| || || || || | Sbjct 28404 AGCCAAGCGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCC 28463 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | || ||||||||| | |||||||| || || || ||||| ||| Sbjct 28464 CAGACCAACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGAT 28507 >seq109 Length=140612 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| |||| || |||||||| || || ||||| || || | Sbjct 74861 GATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGC 74802 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | || | || || || || | ||| || || || || ||| | ||||| Sbjct 74801 AGATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCA 74742 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| || ||||| ||||| |||| ||| | | | || ||||| || Sbjct 74741 GCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAA 74682 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| ||||| |||||||||||||| Sbjct 74681 CATCCAGAAGGAATCTACACTTCACTTGGTGTTGCG 74646 >seq13481 Length=537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || ||||| ||||| || ||||| || | | Sbjct 404 ATGCAGATTTTTGTAAAGACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTAGT 463 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| |||||||| |||||||||||||| ||||| ||||| Sbjct 464 GATACAATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 523 Query 24824 CAACGTTTGATCTT 24837 || || | ||||| Sbjct 524 CAGCGACTAATCTT 537 >seq10106 Length=943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | | ||| || | ||||| || || | || || || | | Sbjct 880 ATGCAGATCTTTGTGAGAGCGCCCACATGCAAAACGATAACTTTGGAGGTGGAGCCGAGT 821 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||||| |||||||||||||| || | |||| Sbjct 820 GACACAATTGAGAATGTGAAAGCGAAGATCCGGGACAAAGAAGGAATTCCATCAAATCAG 761 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | |||| |||||| ||| |||||||||| Sbjct 760 CAGCGTATTATCTATGCCGGCAAAGAGCTGGAGGA 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449819374054800