Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1681 104 2e-17 >seq1681 Length=28542 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | ||||| ||||||||||| | ||| |||||| | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||| ||||| ||||| | || ||||| Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || ||||| | ||||||| | | || || |||| ||||| Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||| |||||||| | ||| ||||||| Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTT 24817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412771611737630