Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10959 143 4e-28 seq2517 122 1e-21 seq1990 100 5e-15 seq286 91.5 2e-12 >seq10959 Length=794 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||| || |||||||| || || || || |||||| |||||| || ||| Sbjct 592 CGGTGTACTTGGTCACAGCCTTGGTGCCTTCCGACACTGCGTGCTTGGCCAACTCACCGG 533 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 ||| || ||| ||||| || ||||| |||||||| | ||| ||| |||||| Sbjct 532 GCAAGAGCAGACGCACTGCCGTCTGAATCTCGCGACTTGTGATGGTGGACTTCTTGTTGT 473 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||||| || | | ||||| | |||| || |||| ||||| || || || |||| Sbjct 472 AGTGCGCCAATCGACTCGACTCGGCGGCGATACGCTCGAAGATGTCATTCACGAAGGAGT 413 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | || ||||||||| ||||||||| || || ||||||| Sbjct 412 TCATGATGGACATAGCCTTCGAGGAGATGCCTGTGTCGGGGTGGACTTGACGCAGCACCT 353 Query 1485707 TGTA 1485710 |||| Sbjct 352 TGTA 349 >seq2517 Length=16602 Score = 122 bits (134), Expect = 1e-21 Identities = 226/329 (69%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || || || ||||| || || || || ||| ||||||||||| || ||||| Sbjct 12033 ACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTGAGACCGGGCATGAGACCACGCTT 11974 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||||||||| | ||| || ||||| |||| || || || || || || Sbjct 11973 CTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAGAAGACACCTTCAACAGCAGCGAA 11914 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAG--GCCCTCTTTGTTGATCCACTTCATCGCC 794517 | |||| | ||||| || || | || |||| |||| |||||| ||| ||| Sbjct 11913 GGCGACAACACGCTCTGC----GTAGCTAGCTTCCCTATTTG-CAATCCACCTCAGAGCC 11859 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || ||||| ||| | || |||| | || || || || |||||| || Sbjct 11858 CAATCGGCCTTCTTCTTGACACAGGGAAGGGTTTCAATTGCATTGAAGAGGAAATCACGT 11799 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | |||| |||| | ||| |||||||||||||| || || | || ||||||||||| Sbjct 11798 TTGGCCGGCTCCTGAATGTAAGTGTCGATGAGGAGAGAATACATTTCGGAGTGGATGTTC 11739 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || | ||| || || | ||||| || || Sbjct 11738 TCAACGGCAATTTGCATACCATAGAAACA 11710 >seq1990 Length=23529 Score = 100 bits (110), Expect = 5e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| |||||||| || || ||||| ||||| ||| | |||| ||| ||| | | Sbjct 7832 TGTATTTGGTAACGGCCTTTGTGCCTTCTGAAACGGCATGCTTAGCCAATTCACCGGGTA 7891 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| ||||| || ||||| ||||| ||| | || || ||||||| | Sbjct 7892 AGAGCAGACGCACAGCAGTCTGAATCTCACGGCTAGTAATAGTTGACTTCTTGTTATAGT 7951 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | || | || | | | || || |||| |||||||| || |||||||||| Sbjct 7952 GGGCCAATCTGCTTGATTCTGCGGCAATACGCTCGAAGATGTCGTTAACGAACGAGTTCA 8011 Query 1485650 TGATCGACAT 1485659 |||| ||||| Sbjct 8012 TGATAGACAT 8021 >seq286 Length=97748 Score = 91.5 bits (100), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2035614 GTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCC 2035673 ||||| ||| || ||||||||| | || | ||||| ||||||||||| || ||| Sbjct 8294 GTCGATCAAGGAACTCTCTTTGAGCTCATTTTGGCCGCAAACTACCTCGATATTAAGGGT 8235 Query 2035674 CTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGAC 2035733 || |||||| | ||||| | || || ||| | |||||||| ||| |||||||||| Sbjct 8234 CTTCTCGATACCTGCTGCAAATCGGTTGCTAACATGATCAAGGGAAAGACGCCCGAGGAA 8175 Query 2035734 ATCCGCAAGACCTTTAACATCAA 2035756 || || || ||||| || ||||| Sbjct 8174 ATTCGGAAAACCTTCAATATCAA 8152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914766729856490