Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1681 87.8 1e-12 seq2406 84.2 1e-11 >seq1681 Length=28542 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| ||||| || || || |||||||| | |||| |||| || Sbjct 24820 ACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCT 24879 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||| || || || ||||| || || ||||| ||| | || | || |||||||| | Sbjct 24880 AATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGG 24939 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || || || || || || | || | | |||||| |||| || ||||| | Sbjct 24940 ATCTTCGCCTTAAC--ATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTT 24997 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||||||||| |||||||| Sbjct 24998 TTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| | || |||| ||||||||||| || || ||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| |||||| | || | ||||||||||| | || || || || || Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTAC--AT 28425 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || | | ||| || || | || || || || || || || ||||| | Sbjct 28424 TCTCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCA 28365 Query 34965 CAAAGATCTGCATGAT 34980 |||| || ||||| || Sbjct 28364 CAAAAATTTGCATTAT 28349 >seq2406 Length=17766 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| |||||| |||||||||||||| || || | || |||| Sbjct 17651 AGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTACGACCATCT 17710 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||||||||||| || || ||||| || || || |||||| | || | |||||||| Sbjct 17711 TCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCCTCCTT 17766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325637585910290