Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq109 150 1e-31 >seq109 Length=140612 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| || ||||| || || ||||| ||||||| | || || Sbjct 74645 ACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCC 74704 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||| || | ||||| | ||||||||| | ||||||||||| || Sbjct 74705 ATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTT 74764 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| | |||||| | || ||| | || | | || | | || ||||||||||| | Sbjct 74765 ATCTCG-AATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGA 74823 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||||||||||||| ||||| |||||||| Sbjct 74824 TAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385153894511310