Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1681 152 1e-31 seq13481 125 1e-23 seq10106 118 2e-21 >seq1681 Length=28542 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||||||||||||||| ||||| || || || || | | ||||||||| ||||| Sbjct 24269 TGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCCAGTTGC 24328 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || || | || |||||||| || |||||||| || || || ||||| Sbjct 24329 TTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTC 24388 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| |||||||| ||| | || || || |||||||||||||| ||||| || Sbjct 24389 GCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGT 24447 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || |||||||| || || ||||| || || || | | | | || Sbjct 24813 ACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCC 24872 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || |||| |||||| || |||||||| || | || ||||||||||| ||||||||||| Sbjct 24873 ATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTT 24932 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || ||||| |||| || ||||| | || || Sbjct 24933 GTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAAT 24992 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||||||||| |||||||| Sbjct 24993 GGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 147 bits (162), Expect = 4e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 |||||||| || || || || || || | | ||| ||||| ||||| || ||||||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | |||||| ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| ||||| | || || ||||| | ||| || || || || || | ||||| ||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 82800 AATATCTGCATTAT 82813 || || |||||||| Sbjct 28362 AAAATTTGCATTAT 28349 Score = 114 bits (126), Expect = 3e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 ||||||| || |||||||| || ||||| ||||| || || ||||| ||||| ||||| Sbjct 24670 ATTAGTCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCACATTC 24729 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 |||||||| ||| | || || || |||||||||||||| ||||| || | || || ||| Sbjct 24730 TCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCACA 24789 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 24790 AAGATTTGCAT 24800 >seq13481 Length=537 Score = 125 bits (138), Expect = 1e-23 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 |||||||||| || ||||||||||| |||||||| || || || ||||| ||||| ||| Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || ||||| |||||| |||| || ||||| | || || || || || || | |||||| Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 82797 ACAAATATCTGCATTATTA 82815 ||||| |||||||| |||| Sbjct 417 ACAAAAATCTGCATAATTA 399 >seq10106 Length=943 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 |||||| |||||||||| | || | || |||| || | |||||| || || | ||| Sbjct 681 AGAGTATATTCTTTCTGAACATCGCAGTCTGATAAGATACGACCGTCCTCCAGCTCTTTG 740 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||| |||| | | || |||| || || |||||||| || || | ||||| ||| Sbjct 741 CCGGCATAGATAATACGCTGCTGATTTGATGGAATTCCTTCTTTGTCCCGGATCTTCGCT 800 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || ||| | || || || |||||||||||||| |||| ||| | Sbjct 801 TTCACATTCTCAATTGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCATGTGGGC 860 Query 82791 GTCTTTACAAATATCTGCAT 82810 | | ||||| |||||||| Sbjct 861 GCTCTCACAAAGATCTGCAT 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981652216915490