Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2142 102 2e-16 >seq2142 Length=21334 Score = 102 bits (112), Expect = 2e-16 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 304883 AATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AG 304939 ||||| ||||||||| |||| || | || ||||| || ||| |||| | ||| || Sbjct 16812 AATTTGCAATATCATGTTGCCACTCTTATTGATAACGATATTCCTGG---TTTGCCAAAG 16756 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || ||||| ||||| || || | ||| |||| || || | ||||| |||| Sbjct 16755 GCTATTCAAAAGTCTGGAAGGCCCCTTAAGTCCATTAAACAGCGTCTAAAAGGCAAAGCT 16696 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 ||||||||| ||||||| | ||||| ||||||||||||||| ||| ||| || || Sbjct 16695 GGTCGTATTAGAGGTAACTTGATGGGCAAACGTGTTGATTTTTCTGCTCGAACAGTCATT 16636 Query 305060 ACACCTGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCC 305100 || ||||| || || || | ||| || || | |||||||| Sbjct 16635 ACCGCTGATCCT-AACTTGGCCCTTGATCAAGTTGGAGTTCC 16595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186601283997510