Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2517 158 2e-32 seq10959 118 2e-20 >seq2517 Length=16602 Score = 158 bits (174), Expect = 2e-32 Identities = 369/545 (68%), Gaps = 14/545 (3%) Strand=Plus/Plus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||| | ||| || ||||| | || ||||| ||||||| || ||||| || | Sbjct 11500 ATCTGGGAATTCTAC-AAGAAGGCTGTCGCTTCCTTCTGGACCGTTGAAGAGGTTGATTT 11558 Query 1455836 CGGCGCCGA---CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | | || ||| | |||||| | |||| |||| |||||| || || || Sbjct 11559 GGCCAAAGATCTCACCG---ACTGGGAGAGACTGAATGACGGCGAGCGTCACTTTATTTC 11615 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||| ||| || ||||||||||| ||||| || || || | Sbjct 11616 CCACGTTCTCGCCTTCTTT-GCTGCCAGCGATGGTATCGTCAATGAAAATCTCTGCATGA 11674 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 ||| |||| || ||| |||| || || |||| || || || | || || ||| Sbjct 11675 ACTTCTGCCAAGAAGTTCAAGTGCCCGAAGCTCGTTGTTTCTATGGTATGCAAATTGCCG 11734 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || ||||||||||| |||| || || ||||| |||||||| ||| | |||| |||| Sbjct 11735 TTGAGAACATCCACTCCGAAATGTATTCTCTCCTCATCGACACTTACATTCAGGAGCCGG 11794 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | | || |||||| || || || || | || | || | ||| ||||||| Sbjct 11795 CCAAACGTGATTTCCTCTTCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAGAAGGCCG 11854 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 | ||||| ||| |||||| ||| |||| | | || || ||||| | |||| Sbjct 11855 ATTGGGCTCTGAGGTGGAT-TGCAAATAGGGAAGCTA-GCTACGCAGAGCGTGTTGTCGC 11912 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCA 1456250 ||| || || || || || |||| ||||| || ||| ||| | ||||||||||| | Sbjct 11913 CTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTC-GCGTCAATCTTTTGGCTTA 11971 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAA 1456310 ||||||| || ||||||||||||| || || || || || || || || || || || Sbjct 11972 AGAAGCGTGGTCTCATGCCCGGTC-TCACTTTCAGTAATGAGTTGATTAGCCGAGATGAG 12030 Query 1456311 GTTTT 1456315 | ||| Sbjct 12031 GGTTT 12035 >seq10959 Length=794 Score = 118 bits (130), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| || || |||||| || | |||| ||| ||| | Sbjct 346 ATCTACAAGGTGCTGCGTCAAGTCCACCCCGACACAGG-----CATC-TCCTCGAAGGCT 399 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| |||| || |||| | ||||| | || Sbjct 400 ATGTCCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGTATCGCCGCCGAGTCGAGT 459 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||||| || ||||||| ||| ||| | |||||||| ||||| || ||| Sbjct 460 CGATTGGCGCACTACAACAAGAAGTCCACCATCACAAGTCGCGAGATTCAGACGGCAGTG 519 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| ||| || |||||| |||||| || || || ||||||| Sbjct 520 CGTCTGCTCTTGCCCGGTGAGTTGGCCAAGCACGCAGTGTCGGAAGGCACCA 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176469554933420