Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1681 116 4e-21 seq2517 84.2 2e-11 >seq1681 Length=28542 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||||||| | ||| || || ||||||||||| || |||||||| | | Sbjct 24802 CCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGAC 24861 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || | |||||||||||||| || | |||||||||||| || || Sbjct 24862 AAAG-TGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGG 24920 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | ||| ||| | || || Sbjct 24921 AATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGAC 24980 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| | ||| || || ||||| ||||| Sbjct 24981 TTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 || || || |||||||||||| | ||| || || || || || ||||| ||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 || | ||| || || || || || ||||| || || |||||||| || || || Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | || ||| | || || |||||||| || |||||||| || | ||| || || Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 134703 AAAATTTGCATT 134714 |||||||||||| Sbjct 28362 AAAATTTGCATT 28351 >seq2517 Length=16602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21721 CAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGA 21780 || || |||| |||||||| ||||| || || |||||| || || ||||| |||||| Sbjct 12053 CAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTGAGA 11994 Query 21781 CCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaC 21840 |||||||| | ||| || || |||| |||| |||| ||| || ||| || || || Sbjct 11993 CCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAGAAG 11934 Query 21841 ACGCCCTCCACAATGGCGAACGCCAC 21866 || || || ||| ||||| || || Sbjct 11933 ACACCTTCAACAGCAGCGAAGGCGAC 11908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505310523853200