Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3050 105 1e-17 >seq3050 Length=12077 Score = 105 bits (116), Expect = 1e-17 Identities = 193/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 ||||| ||||||| ||||||||||| ||| || | || || ||| || ||| Sbjct 3533 GCTAAGCTCTATGCCTATTGGATTGTTGTGAATTATCGGGAAAGCTATAATATATTTGCC 3474 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 ||| ||||||||| || || |||||| ||||| || || ||||||| || || ||| Sbjct 3473 TGTAATGGTATTCTCTTTAATCATGAGAGTCCACGCCGAGGAAAGACTTTTGTCACTCGT 3414 Query 161528 AAGATTACTAGGGGACTATCCCGTATT-AGTACAGGACTACAGGATTGTCTATACCTAGG 161586 || || || | | | | ||| ||| | ||| || ||| || | | | || || Sbjct 3413 AAAATCACCCGTGCAGTCGCCCAAATTAAATAC-GGTAAACAAGAAGTTATTGAACTTGG 3355 Query 161587 TAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTT 161646 |||||| || | ||| |||||||| |||||||||||||||| | || |||||| | Sbjct 3354 TAATCTCAATGCCGAACGTGATTGGGGCTATGCTGAAGACTATGTTTACGCGATGTGGCT 3295 Query 161647 GATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCC 161686 ||| | ||||| || |||| ||| | || |||||| Sbjct 3294 TATGCTGCAACAAGATGAGCCTGTTGATTTAGTTATTGCC 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729802683490800