Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq116 273 3e-68 seq2517 246 4e-60 >seq116 Length=136166 Score = 273 bits (302), Expect = 3e-68 Identities = 446/637 (70%), Gaps = 4/637 (1%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| |||||| | || || ||| ||||||||| | |||||| |||| ||| || Sbjct 11254 CTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCCCAGCAATCAGCCAGACC 11195 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||||||| | || ||| || | ||| ||||| | | ||| | | |||||| Sbjct 11194 CGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTGCATAAA 11135 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 |||||||||||||| ||||| | ||| |||||||| || | | | || ||| || || Sbjct 11134 AAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGT 11075 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || | || || | |||| || | ||||| |||||| ||||| || || || || Sbjct 11074 GTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGC 11015 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || || ||||| || || ||||||| ||||| || ||| |||| | || Sbjct 11014 AAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATTGAACAC 10955 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 || ||||| |||| | ||||| |||| |||||| |||||||||||| || | || || Sbjct 10954 TCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGTACC-CT 10896 Query 69849 TGC-GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 ||| ||||| | || | ||||| || ||||| || | || || |||| |||| Sbjct 10895 TGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAAGGCAC 10836 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | |||| | ||| || || |||||||| || || ||||| |||| | | || |||| Sbjct 10835 ACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAGGAAAC 10776 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||| |||| |||| || | ||||||| ||| || | || || || || ||||||| Sbjct 10775 AGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGA 10716 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGA 70086 |||| |||| ||| | ||||| || || |||| || | ||| | ||| |||| | ||| Sbjct 10715 ACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGA 10657 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 || || | | |||||||| ||||| || || |||| Sbjct 10656 ATGCCCAGGGACACACGCATAAACATGTGTTGGGGTC 10620 >seq2517 Length=16602 Score = 246 bits (272), Expect = 4e-60 Identities = 437/635 (69%), Gaps = 7/635 (1%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| || || ||||||||||| ||| || | |||||||||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 ||| || ||||| || ||||| ||||||||||| || |||||||| || | || || Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || ||||| ||||||| ||||| || || || || || |||| | |||| |||| || Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 39782 GTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | || ||| | |||||| || | |||||||| || |||||||| ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||||| || ||||| ||||| ||| || | || | || || || || || Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | ||| ||||||||| || |||||||| |||| || || || | || || ||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 39959 CTTGCTTCAGTAATTTGTACCTCT--GAACAAAATCTTTCCGCCAAATTTTCATTCACTA 40016 | ||||| | | ||| || ||| | | || || | | | | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAAGTTCATGCAG--AGATTTTCATTGACGA 11651 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTG 40076 | ||||| || || ||||| || || | || || |||||| | || || Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 40077 TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACG 40136 ||| | | | |||||| ||| |||||| | | ||| || |||||| | ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 40137 ACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAA 40196 | || | ||||| ||||| | | ||| ||||| ||||||| || || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 40197 ATCTATTTGGATTTTTTGCAAGGATGGGTTCCATA 40231 | || | ||||| | |||||| ||| || ||| Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATA 11436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686789363732400