Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2517 150 1e-31 >seq2517 Length=16602 Score = 150 bits (166), Expect = 1e-31 Identities = 396/589 (67%), Gaps = 29/589 (5%) Strand=Plus/Plus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACA 43771 || ||||||||||| || || ||| || | ||||| || || || || || ||||| Sbjct 11482 CCCATTCAATATCACGATATCTGGGAATTCTACAAGAAGGCTGTCGCTTCCTTCTGGACC 11541 Query 43772 GCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAA-ACCACAAG 43829 | ||||| ||||||||| | ||||| || | | | ||| | | || || | || Sbjct 11542 GTTGAAGAGGTTGATTTGGCCAAAGATCTCACCGACTGGGAGAGACTGAATGACGGCGAG 11601 Query 43830 AAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || ||||| || ||| | || || |||||||| ||||| || || ||||||| Sbjct 11602 CGTCAC--TTTATTTCCCACGTTCTCGCCTTCTTTGCTGCCAGCGATGGTATCGTCAATG 11659 Query 43890 AAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 ||||| | | || ||| |||||||||||| | || ||||| || ||||| ||| Sbjct 11660 AAAATCTCTGCATGAACTTCTGC-CAAGAAGTTCAAGTGCCCGAAGCTCGTTGTTTCTAT 11718 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || | ||||||||| | || || || || || |||||||| ||| || || || || Sbjct 11719 GGTATGCAAATTGCCGTTGAGAACATCCACTCCGAAATGTATTCTCTCCTCATCGACACT 11778 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGAT----TGTTTAATGCGATAGAAA-CAGTAC 44063 ||||| | || || | || | | ||| | || ||||| || |||| | | | Sbjct 11779 TACATTCAGGA---GCCGGCCAAACGT-GATTTCCTCTTCAATGCAATTGAAACCCTTCC 11834 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT---GATTCT- 44119 ||| | | || | || || || ||||| || | ||||| | ||||| || || Sbjct 11835 CTGTG-TCAAGAAGAAGGCCGATTGGGCTCTGAGGTGGAT---TGCAAATAGGGAAGCTA 11890 Query 44120 --TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | | ||| || ||||||| || || | ||| ||||| | ||||| || || || | Sbjct 11891 GCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCAT 11950 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AA 44235 | ||| | || |||||| | ||||| || ||| | ||||| || | || ||||| || Sbjct 11951 TCGCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCATGCCCGGTCTCAC--TTTCAGTAA 12008 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || || || ||||| || || || ||||| || |||||| Sbjct 12009 TGAGTTGATTAGCCGAGATGAGGGTTTGCACACTGATTTCGCCTGCTTG 12057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397388620029550