Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq194 116 5e-21 seq116 95.1 2e-14 seq2517 82.4 1e-10 >seq194 Length=114854 Score = 116 bits (128), Expect = 5e-21 Identities = 117/150 (78%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 182709 GGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTC 182768 ||||| ||||| || |||||||||| || || |||||||| || || || |||||||| Sbjct 12842 GGGAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACTGCTAGGGTTTTG 12783 Query 182769 GCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTG--TGCC--GTACCCGC 182824 || ||||| ||||| |||| |||||||||||| || |||| | || || ||||| Sbjct 12782 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAGTT----AATTGAATTCCTTGTTCCCGC 12727 Query 182825 CTTGTTCGCGTCATCCAACTTGGGAATACC 182854 | |||||| ||||||| ||| |||||||| Sbjct 12726 ATCGTTCGCATCATCCAGCTTCGGAATACC 12697 >seq116 Length=136166 Score = 95.1 bits (104), Expect = 2e-14 Identities = 190/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 |||||| |||||||| ||| || || |||| ||| |||||||| || | | || Sbjct 11667 CTCAACTGGATAAAAGCATCTATCGATAACTCTGTTGAGATTTTTAGTGATGACACCAGT 11608 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 | | || || | ||| |||| ||||| | || ||||||| | ||||| || Sbjct 11607 TACATACTGCAGCTGATCAAAATCGAAAGTCTTCGCCTTAGTATTGACAAAATTTGGCAG 11548 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 | ||||| |||||||| || || || ||||| || | | || || | |||||| Sbjct 11547 TGATATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTC 11488 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | ||||| | ||| || || |||| || | ||||| || | ||||| Sbjct 11487 AGTGCAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCA 11428 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||||||||||| | |||| |||| | || |||||||| || Sbjct 11427 AGCATCCTTGTAAATCATGAAGGGATTACCAGTCTCCGTTTG 11386 >seq2517 Length=16602 Score = 82.4 bits (90), Expect = 1e-10 Identities = 241/363 (66%), Gaps = 10/363 (3%) Strand=Plus/Minus Query 122527 GAGTTCATACCGATGAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCA 122586 |||||||| || || | || | ||||| ||||| | ||| | |||||||||| Sbjct 12182 GAGTTCATGCCAATCAAGTCAACGGGGAGGGCGTCAGTAAGGAATTCACACTCAATCTCA 12123 Query 122587 ACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAGTGGGTCTATT-ACGCAAAGTCTT 122645 || || | || ||| ||| || | | | | |||||||| ||| || || Sbjct 12122 ACAGCATTACGCATGATCTCGTAGACACGCTGAGGGGATGGTCTATTGACGATGTGT-TT 12064 Query 122646 GAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGA 122705 ||||| | ||| || || ||| | ||||||||||||| ||| | ||||| Sbjct 12063 GAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACT 12004 Query 122706 GAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACC 122764 ||| ||||| ||||||||||| |||||||| | |||| | || | ||| |||||| | Sbjct 12003 GAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGC-GAATGAAC 11945 Query 122765 CGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGA 122823 | |||||||||| ||| || ||| || || || | || || || ||| || ||| Sbjct 11944 CAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCTT 11885 Query 122824 GAC--TTTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAG 122881 | |||| ||| ||| ||| ||||| | |||||||||| | ||| || | | Sbjct 11884 CCCTATTTG---CAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGG 11828 Query 122882 TTT 122884 ||| Sbjct 11827 TTT 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627922800936000