Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq116 129 7e-25 seq194 102 1e-16 >seq116 Length=136166 Score = 129 bits (142), Expect = 7e-25 Identities = 352/536 (66%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 119092 ||||| || ||| || || || || |||||||| ||| | || ||||| | | ||| Sbjct 11149 AACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAAT 11090 Query 119093 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 119152 || ||| |||| || ||||| |||| || | || || ||| | ||||| || Sbjct 11089 CTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGG 11030 Query 119153 TTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGC 119209 ||| ||||| | || | | || ||| | ||| | || | |||||| || || Sbjct 11029 TTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGC 10970 Query 119210 AGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCG 119269 ||| || || || || ||||| |||| | |||| ||||| ||||| || || Sbjct 10969 GGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGA 10910 Query 119270 AATACGAGACTTATTGGCTCTGACATCG-TGGATGTGCATACCAATACCCCCTGCCCACT 119328 |||| || ||| || || | || | | | |||||| || || || || Sbjct 10909 AATAAAAGTACCCTTG-CTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCT 10851 Query 119329 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 119388 |||| ||| || |||| |||| | ||||||| || || || |||| |||| Sbjct 10850 TTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 10791 Query 119389 TTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTG 119448 ||| ||||||||| ||||| |||| |||||| ||||| || | ||||||||||||| Sbjct 10790 TTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTG 10731 Query 119449 GTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAA 119508 | | || || ||||| ||| |||||| | || ||||| ||| | || | Sbjct 10730 GGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGA 10671 Query 119509 TGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 || | |||||||| || | || || ||||||||||||| ||||||| | ||| Sbjct 10670 GATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTCC 10615 Score = 105 bits (116), Expect = 8e-18 Identities = 193/283 (68%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 118589 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648 ||| || |||||||| ||||||||||| || || |||||||| |||| || || Sbjct 11667 CTCAACTGGATAAAAGCATCTATCGATAACTCTGTTGAGATTTTTAGTGATGACACCAGT 11608 Query 118649 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 | | || |||| || |||| ||| | | || ||||||| | || || || Sbjct 11607 TACATACTGCAGCTGATCAAAATCGAAAGTCTTCGCCTTAGTATTGACAAAATTTGGCAG 11548 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 | ||||| |||| ||||||||| | ||||| || | | | || || | |||||| Sbjct 11547 TGATATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTC 11488 Query 118769 CGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 118828 ||||| | || || | ||| || || |||| | | || || || ||| | || || Sbjct 11487 AGTGCAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCA 11428 Query 118829 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 ||||||||||||| |||| | || | || |||||||||||| Sbjct 11427 AGCATCCTTGTAAATCATGAAGGGATTACCAGTCTCCGTTTGG 11385 >seq194 Length=114854 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 179968 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 180027 ||||| ||||| || |||||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 12842 GGGAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACTGCTAGGGTTTTG 12783 Query 180028 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTG--TGCC--GTCCCTGC 180083 || ||||| ||||| || | ||||| ||||| || |||| | || || || || Sbjct 12782 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAGTT----AATTGAATTCCTTGTTCCCGC 12727 Query 180084 CTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 | |||||| || |||| ||| |||||||| Sbjct 12726 ATCGTTCGCATCATCCAGCTTCGGAATACC 12697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618327669579600