Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq116 141 1e-28 seq194 107 2e-18 seq2517 100 3e-16 >seq116 Length=136166 Score = 141 bits (156), Expect = 1e-28 Identities = 412/634 (65%), Gaps = 9/634 (1%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||||| ||||| ||| || | || ||||| || | || | || ||| ||| |||| Sbjct 10629 ACATGTTTATGCGTGTGTCCCTGGGCATTCACGGTGGTGATCTCGAAGCTGCCTTTGAGA 10688 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | || | |||||| ||| ||||| ||| || | ||||| ||||||||| | | Sbjct 10689 CGTATCATCTGATGTCTCAAAAGTGGTTCACTCATGCTTCCCCAACTCTCTTCAATTCGG 10748 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 | |||||| || ||| |||| || || ||||| ||| | | ||||| ||| || Sbjct 10749 GAACACCAGTTCCTCAACTGTCAAGCTGTTTCCTCATCACAATGAAGGATGACAGTATTG 10808 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | |||||||| | || || | ||||||| ||| |||||| ||||| || |||| Sbjct 10809 AGGGTATCTACGATACACTCAAACAGTGTGCCTTAATTTCAAAGAATGCTGGAGGCATTG 10868 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 | | | | ||| | | ||| || |||| || || |||||| ||| Sbjct 10869 GTCTTAATGTTCATTGCATTCGTAGCAAGGGTACTTTTATTTCTGGAACCAATGGTGAAT 10928 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | |||| | |||| ||||| || || || || ||| || | |||||| |||||| Sbjct 10929 CCAATGGCTTGGTTCCTATGCTCCGAGTGTTCAATAGCACCGCTAGATATGTAGATCAAG 10988 Query 104589 CTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 104642 ||| ||||| || || | ||| |||| ||||| || ||||| | ||| Sbjct 10989 GTGGCAATAAGCGTCCT---GGTGCTTTTGCAATCTACCTTGAACCCTGGCATCCTGATG 11045 Query 104643 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATC 104702 || || ||||| | || ||||| ||| || | |||||| || | |||| Sbjct 11046 TCTTGCAGTTCATGGAACTGCGTAGGAACACCGGGGCTGAGGAGATTCGTACTAGAGATC 11105 Query 104703 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 104762 | || | |||||||||||||| ||||| || ||| |||| ||| | | || |||| Sbjct 11106 TATTTTTGGCTCTCTGGATTCCCGATCTTTTTATGCAGAGGGTTCAAAACGATGAGAATT 11165 Query 104763 GGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 104822 || || | | || || | || ||||| | ||| | ||| |||| || | Sbjct 11166 GGACTTTTATGGACCCTCACGAATGTCCGGGTCTGGCTGATTGCTGGGGAAAGGAATTCG 11225 Query 104823 AAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 |||| || ||||| ||||| || | ||| ||||| Sbjct 11226 AAGCGCTCTACACCAAGTATGAAGCAGAGGGTCG 11259 Score = 104 bits (114), Expect = 3e-17 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 105713 GGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTT 105772 ||||| |||||| | || | | ||||||| |||| || ||| | || || || Sbjct 12324 GGTTCTATTCAACACATAGGTGGTATTCCAGATGATATAAAGGCCCTTTATAAGACTGTC 12383 Query 105773 TGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGAT 105832 ||||||||| | ||| | ||||| | ||||||||||||| || |||||||| Sbjct 12384 TGGGAAATCCCGCAGAAAACGATTATTGATCTTGCCGCAGATCGTGCTCCGTTCATTGAC 12443 Query 105833 CAAAGTCAAAGTATGAATCTCTTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTAT 105891 || ||||| | |||||| ||| || || ||||| ||| ||| | |||| || Sbjct 12444 CAGAGTCAGTCACTAAATCTCCACATAAAAGAGCCCAACTATGGA-AAGATTACTTCCAT 12502 Query 105892 GCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATC---TAA 105948 ||| | ||| ||||||||||| || |||||||| ||||||||||| ||| | | Sbjct 12503 GCATTTCTACGCGTGGAAGAAGGGGCTGAAAACGGGTATGTATTACCTTCGAACCCGTCC 12562 Query 105949 GGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981 ||| || |||||||||||||| | |||| Sbjct 12563 TGCA---GCCGACCCAATTCAGTTCACTATTGA 12592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 ||||| |||||||||| || | |||| ||||||| || || || || ||| || Sbjct 11386 CAAACGGAGACTGGTAATCCCTTCATGATTTACAAGGATGCTTGCAATAGAAAATCCAAC 11445 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 || | || ||||| |||||| | |||||||| || || ||||| | |||| || Sbjct 11446 CATCAACATCTGGGTACAATCAAGTGCTCCAATCTTTGCACTGAAATTGTTGAATATAGT 11505 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 || ||||| || |||||||| | || ||||| | || || || | ||| || Sbjct 11506 TCTCCCGAGGAGACTGCCGTGTGTAATTTGGCTTCAATATCACTGCCAAATTTTGTCAAT 11565 Query 105089 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 | || | ||||| || |||| ||| | || || | || || |||| ||| Sbjct 11566 ACTAAGGCGAAGACTTTCGATTTTGATCAGCTGCAGTATGTAACTGGTGTCATCACTAAA 11625 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG 105190 || || ||||||||||| |||||| ||||| || |||||| Sbjct 11626 AATCTCAACAGAGTTATCGATAGATGCTTTTATCCAGTTGAG 11667 >seq194 Length=114854 Score = 107 bits (118), Expect = 2e-18 Identities = 115/150 (77%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 169361 GGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTC 169420 ||||||||||| || |||||||||| || || |||||||| || ||||| || || || Sbjct 12842 GGGAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACTGCTAGGGTTTTG 12783 Query 169421 GCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTG--TGCC--GTACCCGC 169476 || || || |||||||||| ||||| ||||| || |||| | || || ||||| Sbjct 12782 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAGTT----AATTGAATTCCTTGTTCCCGC 12727 Query 169477 CTTGTTCGCATCATCCAATTTGGGAATACC 169506 | |||||||||||||| || |||||||| Sbjct 12726 ATCGTTCGCATCATCCAGCTTCGGAATACC 12697 >seq2517 Length=16602 Score = 100 bits (110), Expect = 3e-16 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | || || |||| |||| ||| | | ||||| || ||||||||| ||| | Sbjct 11809 CTCTTCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAGAAGGCCGATTGGGCTCTGAGG 11868 Query 94774 TGGTTTG-ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| ||| | | | | || | || || ||||| | |||| || || |||||| Sbjct 11869 TGGATTGCAAATAGGGAAGC-TAGCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGA 11927 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 ||| |||||||||||||||| ||| ||| | || | |||||| |||||||| ||||||| Sbjct 11928 AGGTGTCTTCTTCTCTGGTTCATTC-GCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCA 11986 Query 94892 TGCCAGGTCTC 94902 |||| |||||| Sbjct 11987 TGCCCGGTCTC 11997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583159385528400