Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq116 123 3e-23 >seq116 Length=136166 Score = 123 bits (136), Expect = 3e-23 Identities = 379/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323 ||||||| ||| | ||| | ||| | | | | ||| ||| || || ||| | | Sbjct 11259 CGACCCTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCCCAGCAATCAGCC 11200 Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || ||||| || ||||| ||| ||| | ||| | ||| || || | |||| ||| | Sbjct 11199 AGACCCGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTGC 11140 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 || || || || || ||||| || ||| || || || | ||| |||||||| | Sbjct 11139 ATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGCC 11080 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || |||| |||||| || | || | || || || | ||||| || || || ||| Sbjct 11079 CCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTAG 11020 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 || || || | ||| ||||| ||| || || | || || | || ||| | ||| Sbjct 11019 ATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATTG 10960 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 || ||||||||||| || || | ||| | || | || || || || || ||| Sbjct 10959 AACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGTA 10900 Query 79624 CCGCTCGC-CCGAATG-TTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGT 79681 || || || |||||| || || | | || ||||| || | ||| || || Sbjct 10899 CC-CTTGCTACGAATGCAATGAACA-TTAAGACCAATGCCTCCAGCATTCTTTGAAATTA 10842 Query 79682 GCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCA 79741 || |||| ||||| || |||||||| ||||| || ||| |||||||| | || | Sbjct 10841 AGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGA 10782 Query 79742 GGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 |||| ||||| |||| || || || | || || | |||||||| || || | || Sbjct 10781 GGAAACAGCTTGACAGTTGAGGAACTGGT-GTTCCCGAATTGAAGAGAGTTGGGGAAGCA 10723 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 || ||||| ||||||| |||||||| |||||||| Sbjct 10722 TGAGTGAACCACTTTTGAGACATCAGATGATACGTCTC 10685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548429425250400