Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2517 89.7 6e-13 >seq2517 Length=16602 Score = 89.7 bits (98), Expect = 6e-13 Identities = 331/512 (65%), Gaps = 15/512 (3%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | || ||||||| ||| ||||| ||||| || | || || ||||| || ||| Sbjct 12038 TGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTGAGACCGGGCATGAGACCA 11979 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||| | ||||||||| | ||| |||||| |||||||| ||||| ||| Sbjct 11978 CGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAGAAGACACCTTCAACAGCA 11919 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA---GTCATCCAAGTCTGAGCC 74939 || |||||||||| || | ||| | || || | | ||||| || ||||| Sbjct 11918 GCGAAGGCGACAACACGCTCTGCGTAGCTAGCTTCCCTATTTGCAATCCACCTCAGAGCC 11859 Query 74940 CATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTT 74998 || || || || |||| | ||||| | || || || || | ||||||| | Sbjct 11858 CAATCGGCCTTCTTCTTGA-CACAGGGAAGGGTTTCAATTGCATTGAAGAGGAAATCACG 11800 Query 74999 CTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGA 75058 | | || |||| | | |||| || | || || ||| | || || || || Sbjct 11799 TTTGGCCGGCTCCTGAATGTAAGTGTCGATGAGGAGAGAATACATTTCGGAGTGGATGTT 11740 Query 75059 CTCGTTGAACGAC----TG-GTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 ||| |||| | || ||| | |||||| | || || || | | || || || Sbjct 11739 CTC----AACGGCAATTTGCATAC-CATAGAAACAACGAGCTTCGGGCACTTGAACTTCT 11685 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 | | || |||||| || ||| || ||||||| || || ||| || || || || Sbjct 11684 TGGCAGAAGTTCATGCAGAGATTTTCATTGACGATACCATCGCTGGCAGCAAAGAAGGCG 11625 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 || || |||||||| ||||| ||||| | ||| | ||||| || | || || Sbjct 11624 AGAACGTGGGAAATAAAGTGACGCTCGCCGTCATTCAGTCTCTCCCAGTCGGTGAGATCT 11565 Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||||||||| ||| || || |||||||| Sbjct 11564 TTGGCCAAATCAACCTCTTCAACGGTCCAGAA 11533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547120852818000