Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1681 183 3e-41 seq109 167 3e-36 seq13481 116 4e-21 seq116 89.7 6e-13 >seq1681 Length=28542 Score = 183 bits (202), Expect = 3e-41 Identities = 157/194 (81%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||||||||| ||||| ||||| ||||| || || ||||| ||||| || |||||| || Sbjct 28349 ATAATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCA 28408 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||||| ||| | |||||||| ||||| ||||||||||| ||||| |||||| Sbjct 28409 AGCGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGAC 28468 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| || |||||||| |||||||| || |||| ||||||||| | ||||| Sbjct 28469 CAACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTAC 28528 Query 27583 AATGTCCAAAAGGA 27596 || |||| || || Sbjct 28529 AACATCCAGAAAGA 28542 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| |||||||| || || ||||| ||||| || ||| | | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || || ||||||||||| |||||||||||||| ||| Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || ||| | ||||||| || || | | ||||| ||| Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || || || | || |||||||| || ||||| Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGTCTCCGTGGTGG 24802 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || || || || || ||||| || || ||| | ||||| ||| | |||| | |||| Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAG 24400 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 24399 AATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCATA 24340 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || |||||||||||||| || || | |||||| || | ||||| ||| | || || ||| Sbjct 24339 TTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCGGACTACAATATTCAGAAAGAA 24280 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||| || | || ||||| || || Sbjct 24279 TCTACTCTTCATCTTGTGCTTCGCCTTCGTGGCGG 24245 Score = 116 bits (128), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || ||||| || || ||| | ||||| ||| | || Sbjct 24800 ATGCAAATCTTTGTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGT 24741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || || || |||||||||||||||||||| ||||| ||| Sbjct 24740 GACACGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAG 24681 Query 27526 CAGCGTCTAATT 27537 ||||| |||||| Sbjct 24680 CAGCGACTAATT 24669 >seq109 Length=140612 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || ||||| ||||| |||||||| |||||| | | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||| ||| ||||||||||||||| || |||||||| |||||| |||| ||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| || || || ||| | || |||| ||||| || | || || || Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || ||||| | || ||||||||||| ||||| Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTTCGTGGTGG 74634 >seq13481 Length=537 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| ||||| || || || ||||| ||||| || ||| | Sbjct 401 ATTATGCAGATTTTTGTAAAGACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCT 460 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||||| |||| ||| |||| || || || |||||||| || |||||||||||||| Sbjct 461 AGTGATACAATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGAT 520 Query 27523 CAGCAGCGTCTAATTTT 27539 |||||||| ||||| || Sbjct 521 CAGCAGCGACTAATCTT 537 >seq116 Length=136166 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 |||||| ||||| || | ||||||||| |||||| | || | || || || || Sbjct 10873 AAGACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGAT 10814 Query 81558 TCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTT 81616 ||||| || || || | ||||| || | | | |||||||||||||| ||||| | Sbjct 10813 ACCCTCAATACTGTCATCCTTCATTGTGATG-AGGAAACAGCTTGACAGTTGAGGAACTG 10755 Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGT 81676 || || | |||||| || ||||||| || ||| |||| | | |||||||| | Sbjct 10754 GTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGAT 10695 Query 81677 CATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATA 81735 ||| || || | | || | | | ||| |||||||||| || | | ||||||||| Sbjct 10694 GATACGTCTCAAAGGCAGCTTCG-AGATCACCACCGTGAATGCCCAGGGACACACGCATA 10636 Query 81736 AACATGTACTGGGGCGTCTC 81755 ||||||| ||||| |||| Sbjct 10635 AACATGTGTTGGGGTCTCTC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570211237279200